Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_434 and HP15_435 are separated by 80 nucleotides HP15_435 and HP15_436 are separated by 77 nucleotides
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255
_435
HP15_436: HP15_436 - branched-chain-amino-acid aminotransferase, at 438,333 to 439,259
_436
Position (kb) 435
436
437
438
439 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 434.388 kb on - strand, within HP15_434 at 434.428 kb on - strand, within HP15_434 at 434.500 kb on + strand, within HP15_434 at 434.524 kb on + strand, within HP15_434 at 434.632 kb on - strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 435.092 kb on - strand, within HP15_434 at 435.110 kb on - strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.127 kb on - strand, within HP15_434 at 435.304 kb on + strand at 435.339 kb on + strand at 435.339 kb on + strand at 435.491 kb on + strand at 435.491 kb on + strand at 435.545 kb on - strand at 435.581 kb on - strand at 435.828 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.896 kb on + strand, within HP15_435 at 436.004 kb on + strand, within HP15_435 at 436.028 kb on - strand, within HP15_435 at 436.098 kb on - strand, within HP15_435 at 436.300 kb on - strand, within HP15_435 at 436.379 kb on + strand, within HP15_435 at 436.454 kb on + strand, within HP15_435 at 436.499 kb on + strand, within HP15_435 at 436.558 kb on + strand, within HP15_435 at 436.607 kb on - strand, within HP15_435 at 436.654 kb on - strand, within HP15_435 at 436.677 kb on - strand, within HP15_435 at 436.752 kb on + strand, within HP15_435 at 436.835 kb on + strand, within HP15_435 at 436.879 kb on + strand, within HP15_435 at 436.920 kb on + strand, within HP15_435 at 436.928 kb on - strand, within HP15_435 at 436.956 kb on + strand, within HP15_435 at 436.985 kb on - strand, within HP15_435 at 437.010 kb on + strand, within HP15_435 at 437.057 kb on + strand, within HP15_435 at 437.065 kb on - strand, within HP15_435 at 437.152 kb on + strand, within HP15_435 at 437.268 kb on + strand, within HP15_435 at 437.359 kb on + strand, within HP15_435 at 437.378 kb on + strand, within HP15_435 at 437.697 kb on + strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.739 kb on + strand, within HP15_435 at 437.747 kb on - strand, within HP15_435 at 437.801 kb on + strand, within HP15_435 at 437.913 kb on - strand, within HP15_435 at 437.932 kb on - strand, within HP15_435 at 437.989 kb on + strand at 438.023 kb on + strand at 438.036 kb on - strand at 438.188 kb on - strand at 438.195 kb on - strand at 438.216 kb on + strand at 439.065 kb on + strand, within HP15_436 at 439.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 434,388 - HP15_434 0.25 -0.4 434,428 - HP15_434 0.29 +0.0 434,500 + HP15_434 0.35 -1.5 434,524 + HP15_434 0.37 -0.1 434,632 - HP15_434 0.46 +0.0 434,869 + HP15_434 0.66 -0.6 434,869 + HP15_434 0.66 -0.3 434,877 - HP15_434 0.67 +0.4 434,877 - HP15_434 0.67 -0.1 435,092 - HP15_434 0.85 +0.3 435,110 - HP15_434 0.87 -0.3 435,112 + HP15_434 0.87 +0.0 435,112 + HP15_434 0.87 -0.8 435,127 - HP15_434 0.88 +0.3 435,304 + +1.1 435,339 + +0.1 435,339 + -0.4 435,491 + -1.1 435,491 + -2.4 435,545 - +0.2 435,581 - -1.4 435,828 + HP15_435 0.16 -1.9 435,876 + HP15_435 0.18 -2.7 435,876 + HP15_435 0.18 -0.8 435,896 + HP15_435 0.19 -2.3 436,004 + HP15_435 0.23 -0.6 436,028 - HP15_435 0.23 -1.4 436,098 - HP15_435 0.26 -0.6 436,300 - HP15_435 0.33 -1.9 436,379 + HP15_435 0.35 -1.4 436,454 + HP15_435 0.38 -2.7 436,499 + HP15_435 0.40 -1.8 436,558 + HP15_435 0.42 -2.9 436,607 - HP15_435 0.43 -0.2 436,654 - HP15_435 0.45 -1.3 436,677 - HP15_435 0.46 -1.4 436,752 + HP15_435 0.48 -1.7 436,835 + HP15_435 0.51 -4.2 436,879 + HP15_435 0.53 -4.0 436,920 + HP15_435 0.54 -6.1 436,928 - HP15_435 0.54 -0.5 436,956 + HP15_435 0.55 -1.0 436,985 - HP15_435 0.56 -0.3 437,010 + HP15_435 0.57 -1.3 437,057 + HP15_435 0.59 -8.1 437,065 - HP15_435 0.59 +0.7 437,152 + HP15_435 0.62 -1.3 437,268 + HP15_435 0.66 -2.5 437,359 + HP15_435 0.69 -1.5 437,378 + HP15_435 0.70 -3.1 437,697 + HP15_435 0.81 -1.9 437,705 - HP15_435 0.81 -0.9 437,705 - HP15_435 0.81 -1.5 437,739 + HP15_435 0.82 -1.8 437,747 - HP15_435 0.82 -1.7 437,801 + HP15_435 0.84 -1.5 437,913 - HP15_435 0.88 -1.3 437,932 - HP15_435 0.89 -2.8 437,989 + -2.7 438,023 + -0.3 438,036 - -0.5 438,188 - -0.2 438,195 - +0.1 438,216 + -0.6 439,065 + HP15_436 0.79 -1.4 439,187 + -1.7
Or see this region's nucleotide sequence