Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g175

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g173 and HP15_p187g174 are separated by 15 nucleotidesHP15_p187g174 and HP15_p187g175 are separated by 195 nucleotidesHP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339 _p187g173 HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906 _p187g174 HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698 _p187g175 HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196 _p187g176 Position (kb) 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1at 181.145 kb on - strandat 181.215 kb on + strandat 181.259 kb on + strandat 181.283 kb on - strandat 181.285 kb on + strandat 181.285 kb on + strandat 181.285 kb on + strandat 181.293 kb on - strandat 181.293 kb on - strandat 181.343 kb on + strandat 181.428 kb on - strand, within HP15_p187g174at 181.465 kb on - strand, within HP15_p187g174at 181.471 kb on + strand, within HP15_p187g174at 181.484 kb on + strand, within HP15_p187g174at 181.501 kb on + strand, within HP15_p187g174at 181.547 kb on + strand, within HP15_p187g174at 181.547 kb on + strand, within HP15_p187g174at 181.555 kb on - strand, within HP15_p187g174at 181.555 kb on - strand, within HP15_p187g174at 181.567 kb on + strand, within HP15_p187g174at 181.570 kb on - strand, within HP15_p187g174at 181.575 kb on + strand, within HP15_p187g174at 181.667 kb on + strand, within HP15_p187g174at 181.685 kb on - strand, within HP15_p187g174at 181.699 kb on - strand, within HP15_p187g174at 181.699 kb on - strand, within HP15_p187g174at 181.717 kb on + strand, within HP15_p187g174at 181.726 kb on - strand, within HP15_p187g174at 181.906 kb on - strandat 181.999 kb on + strandat 182.007 kb on - strandat 182.059 kb on + strandat 182.069 kb on + strandat 182.069 kb on + strandat 182.077 kb on - strandat 182.078 kb on + strandat 182.078 kb on + strandat 182.083 kb on + strandat 182.086 kb on - strandat 182.088 kb on + strandat 182.088 kb on + strandat 182.088 kb on + strandat 182.091 kb on - strandat 182.091 kb on - strandat 182.096 kb on - strandat 182.096 kb on - strandat 182.096 kb on - strandat 182.098 kb on - strandat 182.100 kb on + strandat 182.136 kb on + strandat 182.210 kb on + strand, within HP15_p187g175at 182.210 kb on + strand, within HP15_p187g175at 182.251 kb on - strand, within HP15_p187g175at 182.497 kb on + strand, within HP15_p187g175at 182.572 kb on + strand, within HP15_p187g175at 182.578 kb on + strand, within HP15_p187g175at 182.714 kb on + strandat 182.722 kb on - strandat 182.906 kb on + strandat 182.906 kb on + strandat 182.914 kb on - strandat 182.914 kb on - strandat 182.914 kb on - strandat 182.914 kb on - strandat 182.914 kb on - strandat 182.924 kb on - strandat 182.937 kb on - strandat 182.969 kb on + strandat 182.983 kb on - strand, within HP15_p187g176at 183.010 kb on + strand, within HP15_p187g176at 183.010 kb on - strand, within HP15_p187g176at 183.011 kb on + strand, within HP15_p187g176at 183.011 kb on + strand, within HP15_p187g176at 183.054 kb on + strand, within HP15_p187g176at 183.054 kb on + strand, within HP15_p187g176at 183.059 kb on + strand, within HP15_p187g176at 183.067 kb on - strand, within HP15_p187g176at 183.072 kb on + strand, within HP15_p187g176at 183.101 kb on - strand, within HP15_p187g176at 183.149 kb on + strand, within HP15_p187g176at 183.220 kb on + strand, within HP15_p187g176at 183.220 kb on + strand, within HP15_p187g176at 183.233 kb on - strand, within HP15_p187g176at 183.269 kb on + strand, within HP15_p187g176at 183.271 kb on + strand, within HP15_p187g176at 183.271 kb on + strand, within HP15_p187g176at 183.271 kb on + strand, within HP15_p187g176at 183.277 kb on - strand, within HP15_p187g176at 183.314 kb on - strand, within HP15_p187g176at 183.320 kb on + strand, within HP15_p187g176at 183.320 kb on + strand, within HP15_p187g176at 183.328 kb on - strand, within HP15_p187g176at 183.337 kb on - strand, within HP15_p187g176at 183.380 kb on + strand, within HP15_p187g176at 183.416 kb on + strand, within HP15_p187g176at 183.416 kb on + strand, within HP15_p187g176at 183.416 kb on + strand, within HP15_p187g176at 183.424 kb on - strand, within HP15_p187g176at 183.453 kb on - strand, within HP15_p187g176at 183.468 kb on - strand, within HP15_p187g176at 183.503 kb on - strand, within HP15_p187g176at 183.534 kb on + strand, within HP15_p187g176at 183.534 kb on + strand, within HP15_p187g176at 183.582 kb on + strand, within HP15_p187g176at 183.582 kb on - strand, within HP15_p187g176at 183.592 kb on - strand, within HP15_p187g176at 183.592 kb on - strand, within HP15_p187g176at 183.638 kb on + strand, within HP15_p187g176at 183.663 kb on + strand, within HP15_p187g176

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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181,145 - -0.3
181,215 + +0.3
181,259 + -0.7
181,283 - +0.3
181,285 + +0.8
181,285 + -1.3
181,285 + +0.1
181,293 - +0.3
181,293 - +0.1
181,343 + -1.2
181,428 - HP15_p187g174 0.13 -0.6
181,465 - HP15_p187g174 0.20 +0.1
181,471 + HP15_p187g174 0.21 -0.1
181,484 + HP15_p187g174 0.23 +0.4
181,501 + HP15_p187g174 0.26 +0.1
181,547 + HP15_p187g174 0.35 +0.5
181,547 + HP15_p187g174 0.35 -2.4
181,555 - HP15_p187g174 0.36 -0.5
181,555 - HP15_p187g174 0.36 -0.2
181,567 + HP15_p187g174 0.38 -0.3
181,570 - HP15_p187g174 0.39 +0.2
181,575 + HP15_p187g174 0.40 +0.1
181,667 + HP15_p187g174 0.57 -0.2
181,685 - HP15_p187g174 0.60 -0.5
181,699 - HP15_p187g174 0.62 -1.3
181,699 - HP15_p187g174 0.62 -0.5
181,717 + HP15_p187g174 0.66 +0.1
181,726 - HP15_p187g174 0.67 +0.6
181,906 - -0.2
181,999 + +0.1
182,007 - -0.1
182,059 + -0.1
182,069 + +1.1
182,069 + +0.5
182,077 - +1.4
182,078 + +0.5
182,078 + -1.0
182,083 + +0.5
182,086 - -0.0
182,088 + +0.6
182,088 + -0.6
182,088 + -0.6
182,091 - -0.2
182,091 - -0.1
182,096 - +0.0
182,096 - +0.1
182,096 - -0.3
182,098 - -0.4
182,100 + -0.5
182,136 + +0.0
182,210 + HP15_p187g175 0.18 +0.9
182,210 + HP15_p187g175 0.18 +0.3
182,251 - HP15_p187g175 0.25 +0.2
182,497 + HP15_p187g175 0.66 +0.5
182,572 + HP15_p187g175 0.79 -0.2
182,578 + HP15_p187g175 0.80 +0.6
182,714 + +0.1
182,722 - +1.0
182,906 + +0.5
182,906 + +0.6
182,914 - +0.8
182,914 - -0.5
182,914 - +0.6
182,914 - +0.6
182,914 - +0.6
182,924 - +0.3
182,937 - +0.6
182,969 + +0.8
182,983 - HP15_p187g176 0.10 +0.4
183,010 + HP15_p187g176 0.12 +0.6
183,010 - HP15_p187g176 0.12 +0.0
183,011 + HP15_p187g176 0.12 +0.4
183,011 + HP15_p187g176 0.12 -0.5
183,054 + HP15_p187g176 0.15 +0.7
183,054 + HP15_p187g176 0.15 +0.8
183,059 + HP15_p187g176 0.16 +0.3
183,067 - HP15_p187g176 0.16 +0.5
183,072 + HP15_p187g176 0.17 +0.1
183,101 - HP15_p187g176 0.19 +0.3
183,149 + HP15_p187g176 0.22 +0.8
183,220 + HP15_p187g176 0.28 -3.1
183,220 + HP15_p187g176 0.28 +0.6
183,233 - HP15_p187g176 0.29 +0.7
183,269 + HP15_p187g176 0.31 +0.6
183,271 + HP15_p187g176 0.31 -0.1
183,271 + HP15_p187g176 0.31 +0.5
183,271 + HP15_p187g176 0.31 +0.4
183,277 - HP15_p187g176 0.32 +0.4
183,314 - HP15_p187g176 0.35 +0.5
183,320 + HP15_p187g176 0.35 +0.6
183,320 + HP15_p187g176 0.35 +0.3
183,328 - HP15_p187g176 0.36 +0.5
183,337 - HP15_p187g176 0.36 +0.4
183,380 + HP15_p187g176 0.39 +1.1
183,416 + HP15_p187g176 0.42 +0.4
183,416 + HP15_p187g176 0.42 +0.6
183,416 + HP15_p187g176 0.42 +0.4
183,424 - HP15_p187g176 0.43 -0.2
183,453 - HP15_p187g176 0.45 +0.5
183,468 - HP15_p187g176 0.46 +1.1
183,503 - HP15_p187g176 0.49 -0.1
183,534 + HP15_p187g176 0.51 -0.1
183,534 + HP15_p187g176 0.51 +0.6
183,582 + HP15_p187g176 0.54 +0.1
183,582 - HP15_p187g176 0.54 +0.3
183,592 - HP15_p187g176 0.55 -0.4
183,592 - HP15_p187g176 0.55 +0.4
183,638 + HP15_p187g176 0.59 -0.1
183,663 + HP15_p187g176 0.60 +0.3

Or see this region's nucleotide sequence