Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_431 and HP15_432 are separated by 488 nucleotides HP15_432 and HP15_433 are separated by 93 nucleotides HP15_433 and HP15_434 are separated by 27 nucleotides
HP15_431: HP15_431 - D-tyrosyl-tRNA(Tyr) deacylase, at 431,148 to 431,606
_431
HP15_432: HP15_432 - outer membrane protein (porin), at 432,095 to 433,102
_432
HP15_433: HP15_433 - adenylate cyclase, at 433,196 to 434,059
_433
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
Position (kb) 432
433
434 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 431.108 kb on + strand at 431.108 kb on + strand at 431.124 kb on + strand at 431.234 kb on - strand, within HP15_431 at 431.406 kb on + strand, within HP15_431 at 431.414 kb on - strand, within HP15_431 at 431.489 kb on + strand, within HP15_431 at 431.507 kb on - strand, within HP15_431 at 431.537 kb on + strand, within HP15_431 at 431.543 kb on + strand, within HP15_431 at 431.550 kb on - strand, within HP15_431 at 431.565 kb on + strand at 431.659 kb on + strand at 431.659 kb on + strand at 431.728 kb on - strand at 431.775 kb on - strand at 431.783 kb on - strand at 431.914 kb on - strand at 432.002 kb on - strand at 432.005 kb on + strand at 432.009 kb on + strand at 432.212 kb on + strand, within HP15_432 at 432.220 kb on - strand, within HP15_432 at 432.291 kb on + strand, within HP15_432 at 432.292 kb on - strand, within HP15_432 at 432.630 kb on - strand, within HP15_432 at 432.702 kb on + strand, within HP15_432 at 432.866 kb on + strand, within HP15_432 at 432.906 kb on - strand, within HP15_432 at 433.236 kb on + strand at 433.261 kb on - strand at 433.261 kb on - strand at 433.288 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.361 kb on - strand, within HP15_433 at 433.406 kb on - strand, within HP15_433 at 433.445 kb on + strand, within HP15_433 at 433.649 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.758 kb on + strand, within HP15_433 at 433.784 kb on + strand, within HP15_433 at 433.792 kb on - strand, within HP15_433 at 433.812 kb on - strand, within HP15_433 at 434.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 431,108 + -1.6 431,108 + -0.7 431,124 + -1.9 431,234 - HP15_431 0.19 -2.8 431,406 + HP15_431 0.56 +0.4 431,414 - HP15_431 0.58 -0.8 431,489 + HP15_431 0.74 -0.4 431,507 - HP15_431 0.78 -0.3 431,537 + HP15_431 0.85 +0.8 431,543 + HP15_431 0.86 +0.5 431,550 - HP15_431 0.88 -0.4 431,565 + +0.7 431,659 + +1.2 431,659 + -0.4 431,728 - -0.9 431,775 - +0.1 431,783 - -1.6 431,914 - -0.1 432,002 - +1.7 432,005 + -0.7 432,009 + -1.6 432,212 + HP15_432 0.12 -1.4 432,220 - HP15_432 0.12 -0.3 432,291 + HP15_432 0.19 -1.7 432,292 - HP15_432 0.20 +0.7 432,630 - HP15_432 0.53 +0.5 432,702 + HP15_432 0.60 +0.1 432,866 + HP15_432 0.76 -1.4 432,906 - HP15_432 0.80 -3.9 433,236 + +0.4 433,261 - -0.3 433,261 - +1.3 433,288 + HP15_433 0.11 -0.3 433,348 + HP15_433 0.18 -1.2 433,348 + HP15_433 0.18 +0.4 433,348 + HP15_433 0.18 -0.2 433,361 - HP15_433 0.19 +0.7 433,406 - HP15_433 0.24 -0.5 433,445 + HP15_433 0.29 -0.1 433,649 + HP15_433 0.52 +1.9 433,689 + HP15_433 0.57 +0.2 433,689 + HP15_433 0.57 -0.2 433,689 + HP15_433 0.57 -0.2 433,689 + HP15_433 0.57 +0.5 433,697 - HP15_433 0.58 +0.2 433,697 - HP15_433 0.58 -0.2 433,697 - HP15_433 0.58 -0.1 433,697 - HP15_433 0.58 +1.3 433,758 + HP15_433 0.65 +0.0 433,784 + HP15_433 0.68 +1.5 433,792 - HP15_433 0.69 +0.4 433,812 - HP15_433 0.71 +0.6 434,001 + +0.5
Or see this region's nucleotide sequence