Strain Fitness in Marinobacter adhaerens HP15 around HP15_44

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_43 and HP15_44 are separated by 179 nucleotidesHP15_44 and HP15_45 are separated by 71 nucleotidesHP15_45 and HP15_46 are separated by 225 nucleotides HP15_43: HP15_43 - crotonobetaine/carnitine-CoA ligase, at 47,091 to 48,722 _43 HP15_44: HP15_44 - DitK protein, at 48,902 to 49,600 _44 HP15_45: HP15_45 - hypothetical protein, at 49,672 to 49,779 _45 HP15_46: HP15_46 - amidohydrolase 2, at 50,005 to 51,081 _46 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.906 kb on + strand, within HP15_43at 47.909 kb on - strand, within HP15_43at 47.929 kb on - strand, within HP15_43at 48.002 kb on - strand, within HP15_43at 48.022 kb on - strand, within HP15_43at 48.022 kb on - strand, within HP15_43at 48.061 kb on - strand, within HP15_43at 48.109 kb on + strand, within HP15_43at 48.152 kb on + strand, within HP15_43at 48.152 kb on + strand, within HP15_43at 48.160 kb on - strand, within HP15_43at 48.183 kb on + strand, within HP15_43at 48.191 kb on - strand, within HP15_43at 48.341 kb on - strand, within HP15_43at 48.459 kb on - strand, within HP15_43at 48.485 kb on - strand, within HP15_43at 48.575 kb on - strandat 48.657 kb on - strandat 48.662 kb on - strandat 48.662 kb on - strandat 48.681 kb on - strandat 48.876 kb on + strandat 48.889 kb on + strandat 48.892 kb on - strandat 48.959 kb on - strandat 48.971 kb on - strandat 48.979 kb on + strand, within HP15_44at 48.999 kb on - strand, within HP15_44at 49.047 kb on + strand, within HP15_44at 49.279 kb on - strand, within HP15_44at 49.342 kb on - strand, within HP15_44at 49.385 kb on - strand, within HP15_44at 49.542 kb on + strandat 49.569 kb on - strandat 49.763 kb on - strand, within HP15_45at 49.864 kb on + strandat 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.133 kb on - strand, within HP15_46at 50.138 kb on + strand, within HP15_46at 50.157 kb on + strand, within HP15_46at 50.159 kb on - strand, within HP15_46at 50.161 kb on - strand, within HP15_46at 50.185 kb on - strand, within HP15_46at 50.255 kb on + strand, within HP15_46at 50.255 kb on + strand, within HP15_46at 50.274 kb on + strand, within HP15_46at 50.297 kb on + strand, within HP15_46at 50.304 kb on + strand, within HP15_46at 50.312 kb on - strand, within HP15_46at 50.422 kb on + strand, within HP15_46at 50.488 kb on - strand, within HP15_46at 50.588 kb on + strand, within HP15_46at 50.596 kb on - strand, within HP15_46

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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47,906 + HP15_43 0.50 -0.2
47,909 - HP15_43 0.50 +0.0
47,929 - HP15_43 0.51 +1.2
48,002 - HP15_43 0.56 +0.7
48,022 - HP15_43 0.57 +0.0
48,022 - HP15_43 0.57 +0.3
48,061 - HP15_43 0.59 +0.5
48,109 + HP15_43 0.62 +0.4
48,152 + HP15_43 0.65 +0.6
48,152 + HP15_43 0.65 -1.3
48,160 - HP15_43 0.66 -0.6
48,183 + HP15_43 0.67 -0.1
48,191 - HP15_43 0.67 -0.2
48,341 - HP15_43 0.77 +1.0
48,459 - HP15_43 0.84 -0.6
48,485 - HP15_43 0.85 +0.3
48,575 - -0.7
48,657 - +0.3
48,662 - +0.5
48,662 - -0.4
48,681 - -0.3
48,876 + -1.1
48,889 + -0.0
48,892 - -1.0
48,959 - +0.1
48,971 - -1.1
48,979 + HP15_44 0.11 -0.6
48,999 - HP15_44 0.14 -3.3
49,047 + HP15_44 0.21 -0.3
49,279 - HP15_44 0.54 -1.1
49,342 - HP15_44 0.63 +0.7
49,385 - HP15_44 0.69 -3.2
49,542 + +0.4
49,569 - -0.4
49,763 - HP15_45 0.84 -1.4
49,864 + +1.2
50,133 - HP15_46 0.12 +0.4
50,133 - HP15_46 0.12 -0.3
50,133 - HP15_46 0.12 +0.1
50,133 - HP15_46 0.12 -0.8
50,138 + HP15_46 0.12 -0.5
50,157 + HP15_46 0.14 -0.1
50,159 - HP15_46 0.14 -0.0
50,161 - HP15_46 0.14 +0.6
50,185 - HP15_46 0.17 -1.5
50,255 + HP15_46 0.23 -0.4
50,255 + HP15_46 0.23 -0.5
50,274 + HP15_46 0.25 -0.5
50,297 + HP15_46 0.27 +0.3
50,304 + HP15_46 0.28 +0.1
50,312 - HP15_46 0.29 +0.8
50,422 + HP15_46 0.39 +1.7
50,488 - HP15_46 0.45 -0.3
50,588 + HP15_46 0.54 -0.8
50,596 - HP15_46 0.55 +0.0

Or see this region's nucleotide sequence