Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g14

Experiment: monoculture; Experiment C, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p42g13 and HP15_p42g14 are separated by 101 nucleotidesHP15_p42g14 and HP15_p42g15 are separated by 144 nucleotides HP15_p42g13: HP15_p42g13 - ParB-like partition protein, at 8,221 to 9,246 _p42g13 HP15_p42g14: HP15_p42g14 - hypothetical protein, at 9,348 to 9,470 _p42g14 HP15_p42g15: HP15_p42g15 - KfrA protein, at 9,615 to 10,646 _p42g15 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1 2at 9.268 kb on - strandat 9.308 kb on - strandat 9.318 kb on - strandat 9.365 kb on - strand, within HP15_p42g14at 9.410 kb on - strand, within HP15_p42g14at 9.452 kb on + strand, within HP15_p42g14at 9.483 kb on + strandat 9.491 kb on - strandat 9.494 kb on + strandat 9.494 kb on + strandat 9.499 kb on + strandat 9.499 kb on + strandat 9.542 kb on + strandat 9.695 kb on + strandat 9.702 kb on + strandat 9.702 kb on + strandat 9.702 kb on + strandat 9.710 kb on - strandat 9.710 kb on - strandat 9.710 kb on - strandat 9.731 kb on - strand, within HP15_p42g15at 9.758 kb on + strand, within HP15_p42g15at 9.780 kb on - strand, within HP15_p42g15at 9.827 kb on + strand, within HP15_p42g15at 9.828 kb on - strand, within HP15_p42g15at 9.852 kb on + strand, within HP15_p42g15at 9.903 kb on - strand, within HP15_p42g15at 10.014 kb on + strand, within HP15_p42g15at 10.043 kb on + strand, within HP15_p42g15at 10.066 kb on - strand, within HP15_p42g15at 10.145 kb on - strand, within HP15_p42g15at 10.189 kb on + strand, within HP15_p42g15at 10.199 kb on - strand, within HP15_p42g15at 10.244 kb on + strand, within HP15_p42g15at 10.253 kb on - strand, within HP15_p42g15at 10.298 kb on + strand, within HP15_p42g15at 10.412 kb on + strand, within HP15_p42g15at 10.412 kb on + strand, within HP15_p42g15

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
remove
9,268 - -0.7
9,308 - -0.8
9,318 - +0.5
9,365 - HP15_p42g14 0.14 -0.6
9,410 - HP15_p42g14 0.50 -0.7
9,452 + HP15_p42g14 0.85 -1.1
9,483 + -0.1
9,491 - -0.4
9,494 + +0.0
9,494 + -0.5
9,499 + -0.2
9,499 + -0.2
9,542 + +1.4
9,695 + +1.6
9,702 + +0.7
9,702 + +1.3
9,702 + +1.5
9,710 - -0.2
9,710 - -0.2
9,710 - +0.6
9,731 - HP15_p42g15 0.11 +0.2
9,758 + HP15_p42g15 0.14 +1.3
9,780 - HP15_p42g15 0.16 +0.4
9,827 + HP15_p42g15 0.21 +2.2
9,828 - HP15_p42g15 0.21 -0.1
9,852 + HP15_p42g15 0.23 +1.1
9,903 - HP15_p42g15 0.28 -0.2
10,014 + HP15_p42g15 0.39 +0.7
10,043 + HP15_p42g15 0.41 +1.8
10,066 - HP15_p42g15 0.44 -1.1
10,145 - HP15_p42g15 0.51 -0.8
10,189 + HP15_p42g15 0.56 +1.6
10,199 - HP15_p42g15 0.57 -0.7
10,244 + HP15_p42g15 0.61 +1.3
10,253 - HP15_p42g15 0.62 -0.0
10,298 + HP15_p42g15 0.66 +1.8
10,412 + HP15_p42g15 0.77 +1.5
10,412 + HP15_p42g15 0.77 +1.1

Or see this region's nucleotide sequence