Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_410 and HP15_411 overlap by 1 nucleotides HP15_411 and HP15_412 are separated by 1 nucleotides HP15_412 and HP15_413 are separated by 17 nucleotides
HP15_410: HP15_410 - fimbrial assembly family protein, at 406,132 to 406,650
_410
HP15_411: HP15_411 - MshA biogenesis protein, MshJ-like protein, at 406,650 to 407,339
_411
HP15_412: HP15_412 - conserved hypothetical protein, secreted, at 407,341 to 407,691
_412
HP15_413: HP15_413 - pilus (MSHA type) biogenesis protein MshL, at 407,709 to 409,422
_413
Position (kb) 407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.462 kb on + strand, within HP15_410 at 406.591 kb on + strand, within HP15_410 at 406.677 kb on - strand at 406.693 kb on + strand at 406.693 kb on + strand at 406.693 kb on + strand at 406.747 kb on + strand, within HP15_411 at 406.840 kb on - strand, within HP15_411 at 406.977 kb on + strand, within HP15_411 at 406.978 kb on - strand, within HP15_411 at 407.012 kb on + strand, within HP15_411 at 407.020 kb on - strand, within HP15_411 at 407.126 kb on + strand, within HP15_411 at 407.256 kb on - strand, within HP15_411 at 407.258 kb on - strand, within HP15_411 at 407.413 kb on + strand, within HP15_412 at 407.421 kb on - strand, within HP15_412 at 407.463 kb on + strand, within HP15_412 at 407.551 kb on + strand, within HP15_412 at 407.569 kb on + strand, within HP15_412 at 407.673 kb on + strand at 407.745 kb on + strand at 407.758 kb on - strand at 407.833 kb on + strand at 408.069 kb on - strand, within HP15_413 at 408.265 kb on - strand, within HP15_413 at 408.305 kb on + strand, within HP15_413 at 408.342 kb on - strand, within HP15_413 at 408.522 kb on + strand, within HP15_413
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 406,462 + HP15_410 0.64 +0.7 406,591 + HP15_410 0.88 -1.3 406,677 - -0.4 406,693 + +0.2 406,693 + +0.3 406,693 + +0.7 406,747 + HP15_411 0.14 -0.2 406,840 - HP15_411 0.28 -0.1 406,977 + HP15_411 0.47 -0.2 406,978 - HP15_411 0.48 +0.2 407,012 + HP15_411 0.52 -0.3 407,020 - HP15_411 0.54 -0.3 407,126 + HP15_411 0.69 -0.1 407,256 - HP15_411 0.88 +0.6 407,258 - HP15_411 0.88 +0.2 407,413 + HP15_412 0.21 +1.7 407,421 - HP15_412 0.23 -0.3 407,463 + HP15_412 0.35 +0.5 407,551 + HP15_412 0.60 +0.4 407,569 + HP15_412 0.65 +1.0 407,673 + -0.2 407,745 + -1.1 407,758 - +1.2 407,833 + -0.7 408,069 - HP15_413 0.21 -1.2 408,265 - HP15_413 0.32 -0.1 408,305 + HP15_413 0.35 -0.8 408,342 - HP15_413 0.37 -3.1 408,522 + HP15_413 0.47 +0.7
Or see this region's nucleotide sequence