Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3584 and HP15_3585 are separated by 110 nucleotides HP15_3585 and HP15_3586 are separated by 10 nucleotides
HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042
_3584
HP15_3585: HP15_3585 - hypothetical protein, at 3,776,153 to 3,776,260
_3585
HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221
_3586
Position (kb)
3776
3777 Strain fitness (log2 ratio)
-1
0
1
2 at 3775.294 kb on - strand, within HP15_3584 at 3775.442 kb on + strand, within HP15_3584 at 3775.514 kb on + strand, within HP15_3584 at 3775.542 kb on - strand, within HP15_3584 at 3775.654 kb on - strand, within HP15_3584 at 3775.657 kb on + strand, within HP15_3584 at 3775.660 kb on - strand, within HP15_3584 at 3775.744 kb on - strand, within HP15_3584 at 3775.769 kb on - strand, within HP15_3584 at 3775.810 kb on + strand, within HP15_3584 at 3775.882 kb on - strand, within HP15_3584 at 3775.912 kb on + strand, within HP15_3584 at 3775.981 kb on - strand at 3776.183 kb on + strand, within HP15_3585 at 3776.195 kb on - strand, within HP15_3585 at 3776.249 kb on - strand, within HP15_3585 at 3776.283 kb on + strand at 3776.482 kb on + strand, within HP15_3586 at 3776.503 kb on - strand, within HP15_3586 at 3776.516 kb on + strand, within HP15_3586 at 3776.780 kb on + strand, within HP15_3586 at 3776.926 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3777.093 kb on + strand, within HP15_3586 at 3777.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 3,775,294 - HP15_3584 0.21 -0.3 3,775,442 + HP15_3584 0.37 -0.8 3,775,514 + HP15_3584 0.44 -0.0 3,775,542 - HP15_3584 0.47 -0.3 3,775,654 - HP15_3584 0.59 -0.2 3,775,657 + HP15_3584 0.59 +0.6 3,775,660 - HP15_3584 0.60 -0.1 3,775,744 - HP15_3584 0.68 +0.5 3,775,769 - HP15_3584 0.71 -0.4 3,775,810 + HP15_3584 0.75 -0.2 3,775,882 - HP15_3584 0.83 -0.0 3,775,912 + HP15_3584 0.86 -0.0 3,775,981 - -0.6 3,776,183 + HP15_3585 0.28 +0.2 3,776,195 - HP15_3585 0.39 +1.7 3,776,249 - HP15_3585 0.89 +0.1 3,776,283 + +0.7 3,776,482 + HP15_3586 0.22 -0.3 3,776,503 - HP15_3586 0.24 -0.9 3,776,516 + HP15_3586 0.26 -0.8 3,776,780 + HP15_3586 0.54 +2.2 3,776,926 + HP15_3586 0.69 +0.3 3,776,988 + HP15_3586 0.75 +0.0 3,776,988 + HP15_3586 0.75 -0.4 3,776,988 + HP15_3586 0.75 +0.4 3,776,996 - HP15_3586 0.76 +0.0 3,776,996 - HP15_3586 0.76 +0.0 3,777,093 + HP15_3586 0.86 -0.9 3,777,179 - -0.4
Or see this region's nucleotide sequence