Strain Fitness in Marinobacter adhaerens HP15 around HP15_3508

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3507 and HP15_3508 are separated by 57 nucleotidesHP15_3508 and HP15_3509 are separated by 7 nucleotidesHP15_3509 and HP15_3510 are separated by 19 nucleotidesHP15_3510 and HP15_3511 are separated by 26 nucleotides HP15_3507: HP15_3507 - aspartate carbamoyltransferase, at 3,691,373 to 3,692,356 _3507 HP15_3508: HP15_3508 - bifunctional protein PyrR, at 3,692,414 to 3,692,923 _3508 HP15_3509: HP15_3509 - Holliday junction resolvase, at 3,692,931 to 3,693,326 _3509 HP15_3510: HP15_3510 - transcriptional regulator, at 3,693,346 to 3,693,882 _3510 HP15_3511: HP15_3511 - TonB family protein, at 3,693,909 to 3,694,775 _3511 Position (kb) 3692 3693Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3691.838 kb on + strand, within HP15_3507at 3692.178 kb on - strand, within HP15_3507at 3692.254 kb on + strand, within HP15_3507at 3692.358 kb on - strandat 3692.449 kb on + strandat 3692.457 kb on - strandat 3692.568 kb on - strand, within HP15_3508at 3692.568 kb on - strand, within HP15_3508at 3692.635 kb on - strand, within HP15_3508at 3692.683 kb on - strand, within HP15_3508at 3692.683 kb on - strand, within HP15_3508at 3692.739 kb on + strand, within HP15_3508at 3692.778 kb on + strand, within HP15_3508at 3692.825 kb on + strand, within HP15_3508at 3692.838 kb on - strand, within HP15_3508at 3692.916 kb on + strandat 3693.439 kb on - strand, within HP15_3510at 3693.595 kb on + strand, within HP15_3510at 3693.595 kb on - strand, within HP15_3510at 3693.634 kb on + strand, within HP15_3510at 3693.662 kb on - strand, within HP15_3510at 3693.781 kb on + strand, within HP15_3510at 3693.789 kb on - strand, within HP15_3510at 3693.789 kb on - strand, within HP15_3510at 3693.789 kb on - strand, within HP15_3510at 3693.789 kb on - strand, within HP15_3510

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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3,691,838 + HP15_3507 0.47 -7.8
3,692,178 - HP15_3507 0.82 -5.5
3,692,254 + HP15_3507 0.90 -5.8
3,692,358 - -7.1
3,692,449 + -6.0
3,692,457 - -4.9
3,692,568 - HP15_3508 0.30 -2.9
3,692,568 - HP15_3508 0.30 -4.0
3,692,635 - HP15_3508 0.43 -2.1
3,692,683 - HP15_3508 0.53 -0.5
3,692,683 - HP15_3508 0.53 -0.1
3,692,739 + HP15_3508 0.64 -1.3
3,692,778 + HP15_3508 0.71 -0.5
3,692,825 + HP15_3508 0.81 -0.5
3,692,838 - HP15_3508 0.83 -3.1
3,692,916 + -0.2
3,693,439 - HP15_3510 0.17 +0.1
3,693,595 + HP15_3510 0.46 -1.1
3,693,595 - HP15_3510 0.46 +0.5
3,693,634 + HP15_3510 0.54 -2.5
3,693,662 - HP15_3510 0.59 -1.0
3,693,781 + HP15_3510 0.81 -2.3
3,693,789 - HP15_3510 0.82 -0.6
3,693,789 - HP15_3510 0.82 +0.3
3,693,789 - HP15_3510 0.82 -0.4
3,693,789 - HP15_3510 0.82 -0.1

Or see this region's nucleotide sequence