Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3507 and HP15_3508 are separated by 57 nucleotides HP15_3508 and HP15_3509 are separated by 7 nucleotides HP15_3509 and HP15_3510 are separated by 19 nucleotides HP15_3510 and HP15_3511 are separated by 26 nucleotides
HP15_3507: HP15_3507 - aspartate carbamoyltransferase, at 3,691,373 to 3,692,356
_3507
HP15_3508: HP15_3508 - bifunctional protein PyrR, at 3,692,414 to 3,692,923
_3508
HP15_3509: HP15_3509 - Holliday junction resolvase, at 3,692,931 to 3,693,326
_3509
HP15_3510: HP15_3510 - transcriptional regulator, at 3,693,346 to 3,693,882
_3510
HP15_3511: HP15_3511 - TonB family protein, at 3,693,909 to 3,694,775
_3511
Position (kb)
3692
3693 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 3691.838 kb on + strand, within HP15_3507 at 3692.178 kb on - strand, within HP15_3507 at 3692.254 kb on + strand, within HP15_3507 at 3692.358 kb on - strand at 3692.449 kb on + strand at 3692.457 kb on - strand at 3692.568 kb on - strand, within HP15_3508 at 3692.568 kb on - strand, within HP15_3508 at 3692.635 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.683 kb on - strand, within HP15_3508 at 3692.739 kb on + strand, within HP15_3508 at 3692.778 kb on + strand, within HP15_3508 at 3692.825 kb on + strand, within HP15_3508 at 3692.838 kb on - strand, within HP15_3508 at 3692.916 kb on + strand at 3693.439 kb on - strand, within HP15_3510 at 3693.595 kb on + strand, within HP15_3510 at 3693.595 kb on - strand, within HP15_3510 at 3693.634 kb on + strand, within HP15_3510 at 3693.662 kb on - strand, within HP15_3510 at 3693.781 kb on + strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510 at 3693.789 kb on - strand, within HP15_3510
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 3,691,838 + HP15_3507 0.47 -7.8 3,692,178 - HP15_3507 0.82 -5.5 3,692,254 + HP15_3507 0.90 -5.8 3,692,358 - -7.1 3,692,449 + -6.0 3,692,457 - -4.9 3,692,568 - HP15_3508 0.30 -2.9 3,692,568 - HP15_3508 0.30 -4.0 3,692,635 - HP15_3508 0.43 -2.1 3,692,683 - HP15_3508 0.53 -0.5 3,692,683 - HP15_3508 0.53 -0.1 3,692,739 + HP15_3508 0.64 -1.3 3,692,778 + HP15_3508 0.71 -0.5 3,692,825 + HP15_3508 0.81 -0.5 3,692,838 - HP15_3508 0.83 -3.1 3,692,916 + -0.2 3,693,439 - HP15_3510 0.17 +0.1 3,693,595 + HP15_3510 0.46 -1.1 3,693,595 - HP15_3510 0.46 +0.5 3,693,634 + HP15_3510 0.54 -2.5 3,693,662 - HP15_3510 0.59 -1.0 3,693,781 + HP15_3510 0.81 -2.3 3,693,789 - HP15_3510 0.82 -0.6 3,693,789 - HP15_3510 0.82 +0.3 3,693,789 - HP15_3510 0.82 -0.4 3,693,789 - HP15_3510 0.82 -0.1
Or see this region's nucleotide sequence