Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_340 and HP15_341 are separated by 136 nucleotides HP15_341 and HP15_342 are separated by 31 nucleotides HP15_342 and HP15_343 are separated by 10 nucleotides HP15_343 and HP15_344 are separated by 17 nucleotides
HP15_340: HP15_340 - lipoprotein, at 336,562 to 337,497
_340
HP15_341: HP15_341 - hypothetical protein, at 337,634 to 337,741
_341
HP15_342: HP15_342 - RNA polymerase sigma factor SigE, at 337,773 to 338,309
_342
HP15_343: HP15_343 - transmembrane anti-sigma factor, at 338,320 to 339,021
_343
HP15_344: HP15_344 - conserved hypothetical protein, secreted, at 339,039 to 339,392
_344
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 336.801 kb on + strand, within HP15_340 at 336.809 kb on - strand, within HP15_340 at 336.810 kb on - strand, within HP15_340 at 336.817 kb on + strand, within HP15_340 at 336.848 kb on + strand, within HP15_340 at 336.933 kb on + strand, within HP15_340 at 336.986 kb on + strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.028 kb on - strand, within HP15_340 at 337.063 kb on - strand, within HP15_340 at 337.242 kb on - strand, within HP15_340 at 337.277 kb on - strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.402 kb on - strand, within HP15_340 at 337.436 kb on + strand at 337.517 kb on + strand at 337.670 kb on - strand, within HP15_341 at 337.692 kb on + strand, within HP15_341 at 337.768 kb on + strand at 337.780 kb on - strand at 337.887 kb on - strand, within HP15_342 at 338.050 kb on + strand, within HP15_342 at 338.190 kb on + strand, within HP15_342 at 338.228 kb on + strand, within HP15_342 at 338.303 kb on + strand at 338.363 kb on + strand at 338.435 kb on + strand, within HP15_343 at 338.487 kb on + strand, within HP15_343 at 338.513 kb on + strand, within HP15_343 at 338.518 kb on + strand, within HP15_343 at 338.572 kb on + strand, within HP15_343 at 338.597 kb on + strand, within HP15_343 at 338.636 kb on - strand, within HP15_343 at 338.800 kb on - strand, within HP15_343 at 338.828 kb on + strand, within HP15_343 at 339.098 kb on + strand, within HP15_344 at 339.098 kb on + strand, within HP15_344 at 339.121 kb on - strand, within HP15_344 at 339.142 kb on + strand, within HP15_344 at 339.289 kb on - strand, within HP15_344 at 339.307 kb on + strand, within HP15_344
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 336,801 + HP15_340 0.26 -1.0 336,809 - HP15_340 0.26 +0.3 336,810 - HP15_340 0.26 +0.6 336,817 + HP15_340 0.27 -0.9 336,848 + HP15_340 0.31 -0.3 336,933 + HP15_340 0.40 +0.0 336,986 + HP15_340 0.45 +0.3 336,994 - HP15_340 0.46 +0.8 336,994 - HP15_340 0.46 -2.4 336,994 - HP15_340 0.46 +0.7 337,020 + HP15_340 0.49 -1.1 337,020 + HP15_340 0.49 +0.3 337,020 + HP15_340 0.49 -0.4 337,020 + HP15_340 0.49 +1.2 337,028 - HP15_340 0.50 -0.1 337,063 - HP15_340 0.54 -0.0 337,242 - HP15_340 0.73 -2.2 337,277 - HP15_340 0.76 -0.1 337,351 + HP15_340 0.84 -0.5 337,351 + HP15_340 0.84 -0.1 337,402 - HP15_340 0.90 -0.7 337,436 + -0.1 337,517 + +0.3 337,670 - HP15_341 0.33 -0.6 337,692 + HP15_341 0.54 -0.6 337,768 + +1.3 337,780 - -0.1 337,887 - HP15_342 0.21 +0.9 338,050 + HP15_342 0.52 +0.3 338,190 + HP15_342 0.78 +0.8 338,228 + HP15_342 0.85 -0.1 338,303 + -0.0 338,363 + +0.4 338,435 + HP15_343 0.16 -1.8 338,487 + HP15_343 0.24 -1.0 338,513 + HP15_343 0.27 -2.1 338,518 + HP15_343 0.28 -0.2 338,572 + HP15_343 0.36 +0.2 338,597 + HP15_343 0.39 +0.2 338,636 - HP15_343 0.45 -0.2 338,800 - HP15_343 0.68 +0.6 338,828 + HP15_343 0.72 -0.1 339,098 + HP15_344 0.17 -0.2 339,098 + HP15_344 0.17 +0.0 339,121 - HP15_344 0.23 +0.6 339,142 + HP15_344 0.29 +0.3 339,289 - HP15_344 0.71 +0.5 339,307 + HP15_344 0.76 -0.4
Or see this region's nucleotide sequence