Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_333 and HP15_334 overlap by 17 nucleotides HP15_334 and HP15_335 are separated by 62 nucleotides HP15_335 and HP15_336 are separated by 40 nucleotides HP15_336 and HP15_337 are separated by 108 nucleotides HP15_337 and HP15_338 overlap by 20 nucleotides
HP15_333: HP15_333 - sugar fermentation stimulation protein-like protein, at 330,379 to 331,110
_333
HP15_334: HP15_334 - Rieske (2Fe-2S) domain protein, at 331,094 to 331,399
_334
HP15_335: HP15_335 - uncharacterized conserved protein UCP029688, pentapeptide, at 331,462 to 331,830
_335
HP15_336: HP15_336 - conserved hypothetical protein, at 331,871 to 333,457
_336
HP15_337: HP15_337 - hypothetical protein, at 333,566 to 333,688
_337
HP15_338: HP15_338 - penicillin-binding protein 1B, at 333,669 to 335,909
_338
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 330.871 kb on - strand, within HP15_333 at 330.904 kb on + strand, within HP15_333 at 330.904 kb on + strand, within HP15_333 at 331.011 kb on - strand, within HP15_333 at 331.146 kb on - strand, within HP15_334 at 331.197 kb on + strand, within HP15_334 at 331.205 kb on - strand, within HP15_334 at 331.266 kb on + strand, within HP15_334 at 331.283 kb on + strand, within HP15_334 at 331.283 kb on + strand, within HP15_334 at 331.284 kb on - strand, within HP15_334 at 331.318 kb on - strand, within HP15_334 at 331.382 kb on - strand at 331.448 kb on + strand at 331.637 kb on - strand, within HP15_335 at 331.714 kb on + strand, within HP15_335 at 331.808 kb on - strand at 331.895 kb on + strand at 331.895 kb on + strand at 331.895 kb on + strand at 331.903 kb on - strand at 331.920 kb on + strand at 331.940 kb on + strand at 331.948 kb on - strand at 331.948 kb on - strand at 331.948 kb on - strand at 332.115 kb on - strand, within HP15_336 at 332.308 kb on + strand, within HP15_336 at 332.312 kb on - strand, within HP15_336 at 332.372 kb on + strand, within HP15_336 at 332.486 kb on + strand, within HP15_336 at 332.489 kb on - strand, within HP15_336 at 332.545 kb on + strand, within HP15_336 at 332.675 kb on + strand, within HP15_336 at 332.675 kb on + strand, within HP15_336 at 332.713 kb on + strand, within HP15_336 at 332.793 kb on + strand, within HP15_336 at 332.934 kb on + strand, within HP15_336 at 333.012 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.245 kb on + strand, within HP15_336 at 333.406 kb on + strand at 333.406 kb on + strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.455 kb on - strand at 333.475 kb on + strand at 333.618 kb on - strand, within HP15_337 at 333.691 kb on + strand at 333.709 kb on + strand at 333.801 kb on - strand at 333.980 kb on + strand, within HP15_338 at 334.061 kb on + strand, within HP15_338 at 334.208 kb on + strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.410 kb on - strand, within HP15_338
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 330,871 - HP15_333 0.67 +1.2 330,904 + HP15_333 0.72 -0.3 330,904 + HP15_333 0.72 +0.6 331,011 - HP15_333 0.86 -0.6 331,146 - HP15_334 0.17 +0.4 331,197 + HP15_334 0.34 -0.7 331,205 - HP15_334 0.36 +0.8 331,266 + HP15_334 0.56 -0.3 331,283 + HP15_334 0.62 -0.8 331,283 + HP15_334 0.62 -0.1 331,284 - HP15_334 0.62 +0.5 331,318 - HP15_334 0.73 +0.6 331,382 - +0.8 331,448 + -0.3 331,637 - HP15_335 0.47 +0.8 331,714 + HP15_335 0.68 +0.6 331,808 - -0.1 331,895 + -0.4 331,895 + -0.3 331,895 + -2.5 331,903 - +0.3 331,920 + -1.4 331,940 + +0.1 331,948 - -0.3 331,948 - -1.4 331,948 - -0.3 332,115 - HP15_336 0.15 -1.5 332,308 + HP15_336 0.28 -1.9 332,312 - HP15_336 0.28 -3.2 332,372 + HP15_336 0.32 -1.9 332,486 + HP15_336 0.39 -2.2 332,489 - HP15_336 0.39 +0.2 332,545 + HP15_336 0.42 -2.6 332,675 + HP15_336 0.51 -2.4 332,675 + HP15_336 0.51 -2.9 332,713 + HP15_336 0.53 -1.8 332,793 + HP15_336 0.58 -2.3 332,934 + HP15_336 0.67 -3.2 333,012 + HP15_336 0.72 -2.4 333,240 + HP15_336 0.86 -0.2 333,240 + HP15_336 0.86 -3.9 333,245 + HP15_336 0.87 -3.3 333,406 + -1.9 333,406 + -3.1 333,414 - -3.2 333,414 - -2.9 333,414 - -3.2 333,414 - -3.0 333,455 - -2.6 333,475 + -3.0 333,618 - HP15_337 0.42 +0.4 333,691 + -0.8 333,709 + -1.0 333,801 - +0.3 333,980 + HP15_338 0.14 -0.1 334,061 + HP15_338 0.17 +0.4 334,208 + HP15_338 0.24 -1.8 334,231 - HP15_338 0.25 +0.5 334,231 - HP15_338 0.25 -0.0 334,242 + HP15_338 0.26 +1.3 334,242 + HP15_338 0.26 -1.1 334,410 - HP15_338 0.33 -0.5 334,410 - HP15_338 0.33 +0.4
Or see this region's nucleotide sequence