Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3274 and HP15_3275 are separated by 66 nucleotides HP15_3275 and HP15_3276 are separated by 25 nucleotides HP15_3276 and HP15_3277 are separated by 43 nucleotides HP15_3277 and HP15_3278 overlap by 8 nucleotides HP15_3278 and HP15_3279 overlap by 4 nucleotides
HP15_3274: HP15_3274 - thiazole synthase, at 3,432,815 to 3,433,624
_3274
HP15_3275: HP15_3275 - ThiS, thiamine-biosynthesis, at 3,433,691 to 3,433,891
_3275
HP15_3276: HP15_3276 - membrane protein containing DUF423, at 3,433,917 to 3,434,276
_3276
HP15_3277: HP15_3277 - diadenosine tetraphosphatase, at 3,434,320 to 3,435,120
_3277
HP15_3278: HP15_3278 - dimethyladenosine transferase, at 3,435,113 to 3,435,943
_3278
HP15_3279: HP15_3279 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,435,940 to 3,436,950
_3279
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3433.620 kb on + strand at 3433.628 kb on - strand at 3433.628 kb on - strand at 3433.661 kb on - strand at 3433.683 kb on - strand at 3433.687 kb on + strand at 3433.689 kb on - strand at 3433.950 kb on - strand at 3434.277 kb on - strand at 3434.577 kb on - strand, within HP15_3277 at 3434.727 kb on - strand, within HP15_3277 at 3435.058 kb on + strand at 3435.245 kb on - strand, within HP15_3278 at 3435.266 kb on + strand, within HP15_3278 at 3435.490 kb on - strand, within HP15_3278 at 3435.569 kb on - strand, within HP15_3278 at 3435.811 kb on - strand, within HP15_3278 at 3435.811 kb on - strand, within HP15_3278 at 3435.811 kb on - strand, within HP15_3278 at 3435.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 3,433,620 + -5.2 3,433,628 - -0.5 3,433,628 - +0.2 3,433,661 - -1.2 3,433,683 - +0.9 3,433,687 + -1.7 3,433,689 - -0.1 3,433,950 - +0.7 3,434,277 - -0.7 3,434,577 - HP15_3277 0.32 +0.7 3,434,727 - HP15_3277 0.51 +0.3 3,435,058 + -0.1 3,435,245 - HP15_3278 0.16 -0.7 3,435,266 + HP15_3278 0.18 -0.8 3,435,490 - HP15_3278 0.45 -0.1 3,435,569 - HP15_3278 0.55 -0.1 3,435,811 - HP15_3278 0.84 +0.2 3,435,811 - HP15_3278 0.84 -3.2 3,435,811 - HP15_3278 0.84 -1.2 3,435,868 + +0.2
Or see this region's nucleotide sequence