Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_329 and HP15_330 overlap by 11 nucleotides HP15_330 and HP15_331 are separated by 50 nucleotides HP15_331 and HP15_332 are separated by 61 nucleotides
HP15_329: HP15_329 - two-component sensor, at 325,645 to 328,608
_329
HP15_330: HP15_330 - conserved hypothetical protein, membrane, at 328,598 to 328,774
_330
HP15_331: HP15_331 - glutamyl-Q tRNA(Asp) synthetase, at 328,825 to 329,697
_331
HP15_332: HP15_332 - transcriptional regulator, TraR/DksA family, at 329,759 to 330,199
_332
Position (kb) 328
329 Strain fitness (log2 ratio) -1
0
1 at 327.624 kb on + strand, within HP15_329 at 327.784 kb on - strand, within HP15_329 at 328.094 kb on - strand, within HP15_329 at 328.341 kb on - strand at 328.525 kb on - strand at 328.668 kb on - strand, within HP15_330 at 328.679 kb on - strand, within HP15_330 at 328.808 kb on + strand at 328.808 kb on + strand at 328.808 kb on + strand at 328.816 kb on - strand at 328.816 kb on - strand at 329.001 kb on - strand, within HP15_331 at 329.099 kb on + strand, within HP15_331 at 329.112 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.131 kb on - strand, within HP15_331 at 329.180 kb on + strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.193 kb on - strand, within HP15_331 at 329.223 kb on - strand, within HP15_331 at 329.225 kb on + strand, within HP15_331 at 329.242 kb on - strand, within HP15_331 at 329.246 kb on + strand, within HP15_331 at 329.254 kb on - strand, within HP15_331 at 329.354 kb on - strand, within HP15_331 at 329.414 kb on + strand, within HP15_331 at 329.449 kb on + strand, within HP15_331 at 329.552 kb on - strand, within HP15_331 at 329.562 kb on + strand, within HP15_331 at 329.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 327,624 + HP15_329 0.67 +0.4 327,784 - HP15_329 0.72 +1.3 328,094 - HP15_329 0.83 +0.7 328,341 - +0.2 328,525 - +0.4 328,668 - HP15_330 0.40 +0.7 328,679 - HP15_330 0.46 +0.1 328,808 + +0.1 328,808 + -0.6 328,808 + -1.2 328,816 - -0.6 328,816 - +0.2 329,001 - HP15_331 0.20 +0.2 329,099 + HP15_331 0.31 +0.1 329,112 - HP15_331 0.33 +0.9 329,120 - HP15_331 0.34 -0.1 329,120 - HP15_331 0.34 -0.0 329,131 - HP15_331 0.35 +0.1 329,180 + HP15_331 0.41 +0.8 329,188 - HP15_331 0.42 +0.0 329,188 - HP15_331 0.42 -0.6 329,193 - HP15_331 0.42 -0.0 329,223 - HP15_331 0.46 +0.0 329,225 + HP15_331 0.46 +0.2 329,242 - HP15_331 0.48 -0.7 329,246 + HP15_331 0.48 +0.2 329,254 - HP15_331 0.49 -0.0 329,354 - HP15_331 0.61 +0.2 329,414 + HP15_331 0.67 -0.1 329,449 + HP15_331 0.71 -0.5 329,552 - HP15_331 0.83 +0.4 329,562 + HP15_331 0.84 -0.5 329,664 + +0.4
Or see this region's nucleotide sequence