Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3203 and HP15_3204 are separated by 26 nucleotides HP15_3204 and HP15_3205 are separated by 136 nucleotides HP15_3205 and HP15_3206 are separated by 6 nucleotides HP15_3206 and HP15_3207 are separated by 10 nucleotides
HP15_3203: HP15_3203 - proline aminopeptidase P II, at 3,355,964 to 3,357,283
_3203
HP15_3204: HP15_3204 - yecA family protein, at 3,357,310 to 3,357,909
_3204
HP15_3205: HP15_3205 - conserved hypothetical protein, secreted, at 3,358,046 to 3,358,609
_3205
HP15_3206: HP15_3206 - conserved hypothetical protein, membrane, at 3,358,616 to 3,359,248
_3206
HP15_3207: HP15_3207 - ABC transporter, ATP-binding protein, at 3,359,259 to 3,359,921
_3207
Position (kb)
3358
3359 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3357.107 kb on - strand, within HP15_3203 at 3357.220 kb on - strand at 3357.308 kb on + strand at 3357.352 kb on + strand at 3357.565 kb on + strand, within HP15_3204 at 3357.593 kb on - strand, within HP15_3204 at 3357.648 kb on - strand, within HP15_3204 at 3357.832 kb on + strand, within HP15_3204 at 3357.943 kb on - strand at 3357.964 kb on + strand at 3357.972 kb on - strand at 3358.145 kb on + strand, within HP15_3205 at 3358.200 kb on - strand, within HP15_3205 at 3358.264 kb on + strand, within HP15_3205 at 3358.292 kb on - strand, within HP15_3205 at 3358.292 kb on - strand, within HP15_3205 at 3358.383 kb on + strand, within HP15_3205 at 3358.445 kb on + strand, within HP15_3205 at 3358.453 kb on - strand, within HP15_3205 at 3358.460 kb on + strand, within HP15_3205 at 3358.463 kb on - strand, within HP15_3205 at 3358.478 kb on - strand, within HP15_3205 at 3358.587 kb on + strand at 3358.630 kb on + strand at 3358.630 kb on + strand at 3358.638 kb on - strand at 3358.638 kb on - strand at 3358.717 kb on - strand, within HP15_3206 at 3358.795 kb on + strand, within HP15_3206 at 3358.926 kb on + strand, within HP15_3206 at 3358.934 kb on - strand, within HP15_3206 at 3358.934 kb on - strand, within HP15_3206 at 3358.946 kb on - strand, within HP15_3206 at 3359.028 kb on - strand, within HP15_3206 at 3359.075 kb on + strand, within HP15_3206 at 3359.078 kb on - strand, within HP15_3206 at 3359.134 kb on + strand, within HP15_3206 at 3359.303 kb on - strand at 3359.404 kb on - strand, within HP15_3207 at 3359.483 kb on + strand, within HP15_3207 at 3359.483 kb on + strand, within HP15_3207 at 3359.483 kb on + strand, within HP15_3207 at 3359.554 kb on + strand, within HP15_3207 at 3359.554 kb on + strand, within HP15_3207 at 3359.562 kb on - strand, within HP15_3207 at 3359.583 kb on - strand, within HP15_3207 at 3359.583 kb on - strand, within HP15_3207
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 3,357,107 - HP15_3203 0.87 -0.4 3,357,220 - +0.8 3,357,308 + +0.5 3,357,352 + +0.1 3,357,565 + HP15_3204 0.42 -0.7 3,357,593 - HP15_3204 0.47 -1.6 3,357,648 - HP15_3204 0.56 +0.0 3,357,832 + HP15_3204 0.87 -0.5 3,357,943 - +1.3 3,357,964 + +2.4 3,357,972 - +0.1 3,358,145 + HP15_3205 0.18 -1.0 3,358,200 - HP15_3205 0.27 -1.2 3,358,264 + HP15_3205 0.39 -0.6 3,358,292 - HP15_3205 0.44 -1.6 3,358,292 - HP15_3205 0.44 -2.2 3,358,383 + HP15_3205 0.60 -1.3 3,358,445 + HP15_3205 0.71 -0.8 3,358,453 - HP15_3205 0.72 -1.9 3,358,460 + HP15_3205 0.73 -0.4 3,358,463 - HP15_3205 0.74 -1.0 3,358,478 - HP15_3205 0.77 -1.6 3,358,587 + +0.6 3,358,630 + -0.5 3,358,630 + +0.0 3,358,638 - +0.4 3,358,638 - -1.0 3,358,717 - HP15_3206 0.16 -1.5 3,358,795 + HP15_3206 0.28 -1.4 3,358,926 + HP15_3206 0.49 -0.7 3,358,934 - HP15_3206 0.50 -0.7 3,358,934 - HP15_3206 0.50 -2.2 3,358,946 - HP15_3206 0.52 -1.1 3,359,028 - HP15_3206 0.65 -2.1 3,359,075 + HP15_3206 0.73 -0.4 3,359,078 - HP15_3206 0.73 +0.8 3,359,134 + HP15_3206 0.82 -0.0 3,359,303 - -1.0 3,359,404 - HP15_3207 0.22 -1.3 3,359,483 + HP15_3207 0.34 -2.1 3,359,483 + HP15_3207 0.34 -3.0 3,359,483 + HP15_3207 0.34 -0.5 3,359,554 + HP15_3207 0.44 -1.3 3,359,554 + HP15_3207 0.44 -2.3 3,359,562 - HP15_3207 0.46 +0.7 3,359,583 - HP15_3207 0.49 -1.0 3,359,583 - HP15_3207 0.49 -0.8
Or see this region's nucleotide sequence