Strain Fitness in Marinobacter adhaerens HP15 around HP15_3092

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3091 and HP15_3092 are separated by 495 nucleotidesHP15_3092 and HP15_3093 overlap by 32 nucleotidesHP15_3093 and HP15_3094 overlap by 4 nucleotides HP15_3091: HP15_3091 - acyltransferase, WS/DGAT/MGAT, at 3,245,759 to 3,247,126 _3091 HP15_3092: HP15_3092 - conserved hypothetical protein, at 3,247,622 to 3,248,755 _3092 HP15_3093: HP15_3093 - phage integrase family protein, at 3,248,724 to 3,249,707 _3093 HP15_3094: HP15_3094 - hypothetical protein, at 3,249,704 to 3,250,969 _3094 Position (kb) 3247 3248 3249Strain fitness (log2 ratio) -1 0 1at 3246.629 kb on - strand, within HP15_3091at 3246.629 kb on - strand, within HP15_3091at 3246.673 kb on - strand, within HP15_3091at 3246.716 kb on - strand, within HP15_3091at 3246.757 kb on + strand, within HP15_3091at 3246.768 kb on + strand, within HP15_3091at 3246.776 kb on - strand, within HP15_3091at 3246.922 kb on + strand, within HP15_3091at 3247.014 kb on - strandat 3247.075 kb on - strandat 3247.075 kb on - strandat 3247.075 kb on - strandat 3247.128 kb on + strandat 3247.729 kb on - strandat 3247.732 kb on - strandat 3247.739 kb on - strand, within HP15_3092at 3247.744 kb on - strand, within HP15_3092at 3247.764 kb on + strand, within HP15_3092at 3247.777 kb on + strand, within HP15_3092at 3247.804 kb on - strand, within HP15_3092at 3247.841 kb on - strand, within HP15_3092at 3247.849 kb on - strand, within HP15_3092at 3248.051 kb on - strand, within HP15_3092at 3248.070 kb on + strand, within HP15_3092at 3248.083 kb on - strand, within HP15_3092at 3248.153 kb on + strand, within HP15_3092at 3248.347 kb on + strand, within HP15_3092at 3248.347 kb on - strand, within HP15_3092at 3248.366 kb on + strand, within HP15_3092at 3248.420 kb on - strand, within HP15_3092at 3248.735 kb on + strandat 3248.757 kb on - strandat 3248.902 kb on + strand, within HP15_3093at 3248.909 kb on + strand, within HP15_3093at 3249.003 kb on - strand, within HP15_3093at 3249.005 kb on + strand, within HP15_3093at 3249.033 kb on - strand, within HP15_3093at 3249.033 kb on - strand, within HP15_3093at 3249.094 kb on + strand, within HP15_3093at 3249.112 kb on - strand, within HP15_3093at 3249.127 kb on + strand, within HP15_3093at 3249.160 kb on - strand, within HP15_3093at 3249.214 kb on + strand, within HP15_3093at 3249.247 kb on + strand, within HP15_3093at 3249.314 kb on + strand, within HP15_3093at 3249.558 kb on - strand, within HP15_3093

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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3,246,629 - HP15_3091 0.64 +0.7
3,246,629 - HP15_3091 0.64 -1.3
3,246,673 - HP15_3091 0.67 +0.1
3,246,716 - HP15_3091 0.70 +0.3
3,246,757 + HP15_3091 0.73 -0.4
3,246,768 + HP15_3091 0.74 -0.5
3,246,776 - HP15_3091 0.74 +0.3
3,246,922 + HP15_3091 0.85 -0.3
3,247,014 - +0.5
3,247,075 - +0.2
3,247,075 - -0.7
3,247,075 - -1.5
3,247,128 + -0.1
3,247,729 - -0.2
3,247,732 - -0.3
3,247,739 - HP15_3092 0.10 +1.3
3,247,744 - HP15_3092 0.11 +0.8
3,247,764 + HP15_3092 0.13 +0.5
3,247,777 + HP15_3092 0.14 -0.4
3,247,804 - HP15_3092 0.16 +1.0
3,247,841 - HP15_3092 0.19 +0.5
3,247,849 - HP15_3092 0.20 +0.5
3,248,051 - HP15_3092 0.38 +0.1
3,248,070 + HP15_3092 0.40 +0.5
3,248,083 - HP15_3092 0.41 +1.0
3,248,153 + HP15_3092 0.47 +0.4
3,248,347 + HP15_3092 0.64 -0.4
3,248,347 - HP15_3092 0.64 -0.0
3,248,366 + HP15_3092 0.66 +0.5
3,248,420 - HP15_3092 0.70 +0.7
3,248,735 + -0.5
3,248,757 - +1.0
3,248,902 + HP15_3093 0.18 +0.7
3,248,909 + HP15_3093 0.19 -0.9
3,249,003 - HP15_3093 0.28 -0.3
3,249,005 + HP15_3093 0.29 -0.1
3,249,033 - HP15_3093 0.31 +0.9
3,249,033 - HP15_3093 0.31 -0.9
3,249,094 + HP15_3093 0.38 -1.3
3,249,112 - HP15_3093 0.39 +0.7
3,249,127 + HP15_3093 0.41 -0.5
3,249,160 - HP15_3093 0.44 -0.6
3,249,214 + HP15_3093 0.50 -0.4
3,249,247 + HP15_3093 0.53 -0.6
3,249,314 + HP15_3093 0.60 -0.2
3,249,558 - HP15_3093 0.85 +0.4

Or see this region's nucleotide sequence