Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2842 and HP15_2843 are separated by 430 nucleotides HP15_2843 and HP15_2844 are separated by 121 nucleotides HP15_2844 and HP15_2845 are separated by 30 nucleotides HP15_2845 and HP15_2846 are separated by 224 nucleotides
HP15_2842: HP15_2842 - transcriptional regulatory protein, at 2,984,509 to 2,985,225
_2842
HP15_2843: HP15_2843 - YHS domain protein, at 2,985,656 to 2,986,099
_2843
HP15_2844: HP15_2844 - hypothetical protein, at 2,986,221 to 2,986,388
_2844
HP15_2845: HP15_2845 - conserved hypothetical protein, at 2,986,419 to 2,987,099
_2845
HP15_2846: HP15_2846 - conserved hypothetical protein, at 2,987,324 to 2,987,851
_2846
Position (kb)
2986
2987 Strain fitness (log2 ratio)
-1
0
1
2 at 2985.286 kb on - strand at 2985.288 kb on - strand at 2985.350 kb on + strand at 2985.364 kb on + strand at 2985.364 kb on + strand at 2985.389 kb on - strand at 2985.425 kb on + strand at 2985.534 kb on - strand at 2985.539 kb on - strand at 2985.593 kb on + strand at 2985.609 kb on + strand at 2985.714 kb on - strand, within HP15_2843 at 2985.750 kb on + strand, within HP15_2843 at 2985.753 kb on - strand, within HP15_2843 at 2985.825 kb on + strand, within HP15_2843 at 2985.833 kb on - strand, within HP15_2843 at 2985.843 kb on - strand, within HP15_2843 at 2985.847 kb on - strand, within HP15_2843 at 2985.968 kb on + strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2986.030 kb on - strand, within HP15_2843 at 2986.072 kb on + strand at 2986.096 kb on - strand at 2986.214 kb on - strand at 2986.214 kb on - strand at 2986.279 kb on - strand, within HP15_2844 at 2986.321 kb on + strand, within HP15_2844 at 2986.562 kb on + strand, within HP15_2845 at 2986.697 kb on + strand, within HP15_2845 at 2986.783 kb on + strand, within HP15_2845 at 2986.924 kb on - strand, within HP15_2845 at 2986.976 kb on + strand, within HP15_2845 at 2987.044 kb on + strand at 2987.166 kb on + strand at 2987.191 kb on + strand at 2987.199 kb on - strand at 2987.241 kb on - strand at 2987.300 kb on - strand at 2987.314 kb on + strand at 2987.334 kb on - strand at 2987.336 kb on + strand at 2987.338 kb on + strand at 2987.344 kb on - strand at 2987.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,985,286 - -0.6 2,985,288 - +0.5 2,985,350 + +0.2 2,985,364 + +1.4 2,985,364 + -0.2 2,985,389 - +0.4 2,985,425 + -0.1 2,985,534 - +0.2 2,985,539 - +0.4 2,985,593 + -0.8 2,985,609 + +0.0 2,985,714 - HP15_2843 0.13 +0.6 2,985,750 + HP15_2843 0.21 -0.8 2,985,753 - HP15_2843 0.22 +0.1 2,985,825 + HP15_2843 0.38 +0.2 2,985,833 - HP15_2843 0.40 +1.6 2,985,843 - HP15_2843 0.42 +0.2 2,985,847 - HP15_2843 0.43 -1.5 2,985,968 + HP15_2843 0.70 -0.4 2,985,976 - HP15_2843 0.72 +0.3 2,985,976 - HP15_2843 0.72 +0.0 2,985,981 - HP15_2843 0.73 +2.6 2,985,981 - HP15_2843 0.73 -0.5 2,985,981 - HP15_2843 0.73 +0.5 2,986,030 - HP15_2843 0.84 +0.9 2,986,072 + +0.4 2,986,096 - +0.1 2,986,214 - +1.1 2,986,214 - +0.1 2,986,279 - HP15_2844 0.35 +0.1 2,986,321 + HP15_2844 0.60 +0.7 2,986,562 + HP15_2845 0.21 -0.4 2,986,697 + HP15_2845 0.41 +0.4 2,986,783 + HP15_2845 0.53 -0.2 2,986,924 - HP15_2845 0.74 +0.1 2,986,976 + HP15_2845 0.82 -1.7 2,987,044 + +0.5 2,987,166 + +0.4 2,987,191 + -0.0 2,987,199 - +0.4 2,987,241 - +0.3 2,987,300 - +0.1 2,987,314 + -0.9 2,987,334 - +0.6 2,987,336 + +1.1 2,987,338 + +1.8 2,987,344 - +0.4 2,987,346 - +0.3
Or see this region's nucleotide sequence