Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_285 and HP15_286 are separated by 243 nucleotides HP15_286 and HP15_287 are separated by 22 nucleotides HP15_287 and HP15_288 are separated by 61 nucleotides HP15_288 and HP15_289 are separated by 224 nucleotides
HP15_285: HP15_285 - conserved hypothetical protein, at 275,412 to 277,376
_285
HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204
_286
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001
_289
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 277.231 kb on - strand at 277.256 kb on + strand at 277.339 kb on + strand at 277.360 kb on + strand at 277.598 kb on - strand at 277.641 kb on + strand at 277.641 kb on + strand at 277.721 kb on + strand, within HP15_286 at 277.721 kb on + strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.749 kb on + strand, within HP15_286 at 277.749 kb on - strand, within HP15_286 at 277.884 kb on - strand, within HP15_286 at 277.890 kb on + strand, within HP15_286 at 277.895 kb on + strand, within HP15_286 at 277.896 kb on - strand, within HP15_286 at 277.905 kb on + strand, within HP15_286 at 277.971 kb on + strand, within HP15_286 at 277.972 kb on - strand, within HP15_286 at 277.977 kb on + strand, within HP15_286 at 278.035 kb on - strand, within HP15_286 at 278.153 kb on + strand at 278.576 kb on + strand, within HP15_287 at 278.874 kb on + strand, within HP15_287 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand at 279.228 kb on + strand, within HP15_288 at 279.231 kb on - strand, within HP15_288 at 279.261 kb on - strand, within HP15_288 at 279.312 kb on + strand, within HP15_288 at 279.411 kb on - strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.623 kb on + strand, within HP15_288 at 279.654 kb on - strand, within HP15_288 at 279.739 kb on + strand at 279.739 kb on + strand at 279.811 kb on + strand at 279.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 277,231 - +0.6 277,256 + +1.1 277,339 + +0.3 277,360 + +0.5 277,598 - -1.0 277,641 + +0.1 277,641 + -1.9 277,721 + HP15_286 0.17 -0.9 277,721 + HP15_286 0.17 -0.2 277,729 - HP15_286 0.19 -0.0 277,729 - HP15_286 0.19 -0.9 277,729 - HP15_286 0.19 -0.2 277,729 - HP15_286 0.19 -0.0 277,729 - HP15_286 0.19 +0.5 277,749 + HP15_286 0.22 -0.3 277,749 - HP15_286 0.22 +0.2 277,884 - HP15_286 0.45 +1.1 277,890 + HP15_286 0.46 -1.3 277,895 + HP15_286 0.47 +0.7 277,896 - HP15_286 0.47 +0.1 277,905 + HP15_286 0.49 -0.2 277,971 + HP15_286 0.60 -0.2 277,972 - HP15_286 0.60 -0.3 277,977 + HP15_286 0.61 -0.8 278,035 - HP15_286 0.71 +1.2 278,153 + -0.3 278,576 + HP15_287 0.42 -0.3 278,874 + HP15_287 0.78 -3.3 279,061 + -0.3 279,067 + -1.4 279,094 + -3.2 279,097 - +1.2 279,102 - -0.2 279,151 + +0.2 279,151 + +0.2 279,159 - -0.3 279,159 - -0.1 279,164 - -0.8 279,228 + HP15_288 0.17 -0.3 279,231 - HP15_288 0.18 -0.3 279,261 - HP15_288 0.22 -0.1 279,312 + HP15_288 0.31 +0.1 279,411 - HP15_288 0.47 -0.1 279,510 + HP15_288 0.62 +0.7 279,510 + HP15_288 0.62 -0.4 279,623 + HP15_288 0.81 -0.3 279,654 - HP15_288 0.86 +1.2 279,739 + +1.2 279,739 + -0.6 279,811 + -0.4 279,824 - +1.3
Or see this region's nucleotide sequence