Strain Fitness in Marinobacter adhaerens HP15 around HP15_2821

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2820 and HP15_2821 are separated by 37 nucleotidesHP15_2821 and HP15_2822 are separated by 113 nucleotidesHP15_2822 and HP15_2823 overlap by 11 nucleotides HP15_2820: HP15_2820 - phosphate: Na+ symporter, at 2,965,606 to 2,967,414 _2820 HP15_2821: HP15_2821 - hypothetical protein, at 2,967,452 to 2,967,700 _2821 HP15_2822: HP15_2822 - MutT/nudix family protein, at 2,967,814 to 2,968,296 _2822 HP15_2823: HP15_2823 - Zn-dependent hydrolase of the beta-lactamase fold, at 2,968,286 to 2,969,311 _2823 Position (kb) 2967 2968Strain fitness (log2 ratio) -2 -1 0 1 2at 2966.473 kb on - strand, within HP15_2820at 2966.612 kb on + strand, within HP15_2820at 2966.654 kb on + strand, within HP15_2820at 2966.673 kb on + strand, within HP15_2820at 2966.703 kb on + strand, within HP15_2820at 2966.756 kb on + strand, within HP15_2820at 2966.858 kb on - strand, within HP15_2820at 2966.885 kb on - strand, within HP15_2820at 2967.039 kb on + strand, within HP15_2820at 2967.151 kb on + strand, within HP15_2820at 2967.330 kb on + strandat 2967.338 kb on - strandat 2967.370 kb on - strandat 2967.375 kb on - strandat 2967.402 kb on + strandat 2967.402 kb on + strandat 2967.418 kb on + strandat 2967.429 kb on + strandat 2967.657 kb on - strand, within HP15_2821at 2967.673 kb on + strand, within HP15_2821at 2967.685 kb on + strandat 2967.693 kb on - strandat 2967.693 kb on - strandat 2967.693 kb on - strandat 2967.773 kb on - strandat 2967.845 kb on - strandat 2967.857 kb on - strandat 2968.037 kb on + strand, within HP15_2822at 2968.045 kb on - strand, within HP15_2822at 2968.045 kb on - strand, within HP15_2822at 2968.061 kb on + strand, within HP15_2822at 2968.091 kb on - strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.501 kb on + strand, within HP15_2823at 2968.504 kb on - strand, within HP15_2823at 2968.509 kb on - strand, within HP15_2823at 2968.511 kb on + strand, within HP15_2823at 2968.595 kb on - strand, within HP15_2823at 2968.609 kb on + strand, within HP15_2823at 2968.610 kb on - strand, within HP15_2823

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,966,473 - HP15_2820 0.48 -0.1
2,966,612 + HP15_2820 0.56 -0.2
2,966,654 + HP15_2820 0.58 -0.7
2,966,673 + HP15_2820 0.59 +0.1
2,966,703 + HP15_2820 0.61 -1.9
2,966,756 + HP15_2820 0.64 +0.6
2,966,858 - HP15_2820 0.69 +0.3
2,966,885 - HP15_2820 0.71 +2.4
2,967,039 + HP15_2820 0.79 +0.3
2,967,151 + HP15_2820 0.85 -0.4
2,967,330 + +0.7
2,967,338 - -0.6
2,967,370 - -1.8
2,967,375 - -0.6
2,967,402 + -0.0
2,967,402 + +0.1
2,967,418 + +0.0
2,967,429 + +0.2
2,967,657 - HP15_2821 0.82 -0.4
2,967,673 + HP15_2821 0.89 -1.3
2,967,685 + +0.3
2,967,693 - +0.5
2,967,693 - -1.0
2,967,693 - -0.4
2,967,773 - -0.1
2,967,845 - -0.4
2,967,857 - +0.0
2,968,037 + HP15_2822 0.46 -2.4
2,968,045 - HP15_2822 0.48 +0.9
2,968,045 - HP15_2822 0.48 +0.5
2,968,061 + HP15_2822 0.51 -0.4
2,968,091 - HP15_2822 0.57 -0.5
2,968,165 + HP15_2822 0.73 -0.4
2,968,165 + HP15_2822 0.73 +0.2
2,968,165 + HP15_2822 0.73 -0.5
2,968,165 + HP15_2822 0.73 -1.9
2,968,173 - HP15_2822 0.74 +0.1
2,968,173 - HP15_2822 0.74 -0.4
2,968,173 - HP15_2822 0.74 +0.5
2,968,173 - HP15_2822 0.74 -0.1
2,968,501 + HP15_2823 0.21 -1.7
2,968,504 - HP15_2823 0.21 -1.9
2,968,509 - HP15_2823 0.22 -0.3
2,968,511 + HP15_2823 0.22 -0.6
2,968,595 - HP15_2823 0.30 +0.4
2,968,609 + HP15_2823 0.31 -0.3
2,968,610 - HP15_2823 0.32 +0.1

Or see this region's nucleotide sequence