Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2820 and HP15_2821 are separated by 37 nucleotides HP15_2821 and HP15_2822 are separated by 113 nucleotides HP15_2822 and HP15_2823 overlap by 11 nucleotides
HP15_2820: HP15_2820 - phosphate: Na+ symporter, at 2,965,606 to 2,967,414
_2820
HP15_2821: HP15_2821 - hypothetical protein, at 2,967,452 to 2,967,700
_2821
HP15_2822: HP15_2822 - MutT/nudix family protein, at 2,967,814 to 2,968,296
_2822
HP15_2823: HP15_2823 - Zn-dependent hydrolase of the beta-lactamase fold, at 2,968,286 to 2,969,311
_2823
Position (kb)
2967
2968 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2966.473 kb on - strand, within HP15_2820 at 2966.612 kb on + strand, within HP15_2820 at 2966.654 kb on + strand, within HP15_2820 at 2966.673 kb on + strand, within HP15_2820 at 2966.703 kb on + strand, within HP15_2820 at 2966.756 kb on + strand, within HP15_2820 at 2966.858 kb on - strand, within HP15_2820 at 2966.885 kb on - strand, within HP15_2820 at 2967.039 kb on + strand, within HP15_2820 at 2967.151 kb on + strand, within HP15_2820 at 2967.330 kb on + strand at 2967.338 kb on - strand at 2967.370 kb on - strand at 2967.375 kb on - strand at 2967.402 kb on + strand at 2967.402 kb on + strand at 2967.418 kb on + strand at 2967.429 kb on + strand at 2967.657 kb on - strand, within HP15_2821 at 2967.673 kb on + strand, within HP15_2821 at 2967.685 kb on + strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.773 kb on - strand at 2967.845 kb on - strand at 2967.857 kb on - strand at 2968.037 kb on + strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.061 kb on + strand, within HP15_2822 at 2968.091 kb on - strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.501 kb on + strand, within HP15_2823 at 2968.504 kb on - strand, within HP15_2823 at 2968.509 kb on - strand, within HP15_2823 at 2968.511 kb on + strand, within HP15_2823 at 2968.595 kb on - strand, within HP15_2823 at 2968.609 kb on + strand, within HP15_2823 at 2968.610 kb on - strand, within HP15_2823
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,966,473 - HP15_2820 0.48 -0.1 2,966,612 + HP15_2820 0.56 -0.2 2,966,654 + HP15_2820 0.58 -0.7 2,966,673 + HP15_2820 0.59 +0.1 2,966,703 + HP15_2820 0.61 -1.9 2,966,756 + HP15_2820 0.64 +0.6 2,966,858 - HP15_2820 0.69 +0.3 2,966,885 - HP15_2820 0.71 +2.4 2,967,039 + HP15_2820 0.79 +0.3 2,967,151 + HP15_2820 0.85 -0.4 2,967,330 + +0.7 2,967,338 - -0.6 2,967,370 - -1.8 2,967,375 - -0.6 2,967,402 + -0.0 2,967,402 + +0.1 2,967,418 + +0.0 2,967,429 + +0.2 2,967,657 - HP15_2821 0.82 -0.4 2,967,673 + HP15_2821 0.89 -1.3 2,967,685 + +0.3 2,967,693 - +0.5 2,967,693 - -1.0 2,967,693 - -0.4 2,967,773 - -0.1 2,967,845 - -0.4 2,967,857 - +0.0 2,968,037 + HP15_2822 0.46 -2.4 2,968,045 - HP15_2822 0.48 +0.9 2,968,045 - HP15_2822 0.48 +0.5 2,968,061 + HP15_2822 0.51 -0.4 2,968,091 - HP15_2822 0.57 -0.5 2,968,165 + HP15_2822 0.73 -0.4 2,968,165 + HP15_2822 0.73 +0.2 2,968,165 + HP15_2822 0.73 -0.5 2,968,165 + HP15_2822 0.73 -1.9 2,968,173 - HP15_2822 0.74 +0.1 2,968,173 - HP15_2822 0.74 -0.4 2,968,173 - HP15_2822 0.74 +0.5 2,968,173 - HP15_2822 0.74 -0.1 2,968,501 + HP15_2823 0.21 -1.7 2,968,504 - HP15_2823 0.21 -1.9 2,968,509 - HP15_2823 0.22 -0.3 2,968,511 + HP15_2823 0.22 -0.6 2,968,595 - HP15_2823 0.30 +0.4 2,968,609 + HP15_2823 0.31 -0.3 2,968,610 - HP15_2823 0.32 +0.1
Or see this region's nucleotide sequence