Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_282 and HP15_283 are separated by 2 nucleotides HP15_283 and HP15_284 overlap by 4 nucleotides HP15_284 and HP15_285 are separated by 127 nucleotides
HP15_282: HP15_282 - conserved hypothetical protein, secreted, at 273,082 to 273,537
_282
HP15_283: HP15_283 - methionine biosynthesis protein MetW, at 273,540 to 274,139
_283
HP15_284: HP15_284 - homoserine O-acetyltransferase, at 274,136 to 275,284
_284
HP15_285: HP15_285 - conserved hypothetical protein, at 275,412 to 277,376
_285
Position (kb) 274
275
276 Strain fitness (log2 ratio) -11
-10
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 273.282 kb on - strand, within HP15_282 at 273.350 kb on + strand, within HP15_282 at 273.354 kb on - strand, within HP15_282 at 273.379 kb on - strand, within HP15_282 at 273.404 kb on + strand, within HP15_282 at 273.409 kb on + strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.417 kb on - strand, within HP15_282 at 273.419 kb on + strand, within HP15_282 at 273.419 kb on + strand, within HP15_282 at 273.422 kb on - strand, within HP15_282 at 273.428 kb on + strand, within HP15_282 at 273.434 kb on - strand, within HP15_282 at 273.436 kb on - strand, within HP15_282 at 273.483 kb on - strand, within HP15_282 at 273.701 kb on + strand, within HP15_283 at 273.709 kb on - strand, within HP15_283 at 273.709 kb on - strand, within HP15_283 at 273.854 kb on - strand, within HP15_283 at 273.917 kb on + strand, within HP15_283 at 273.932 kb on + strand, within HP15_283 at 273.932 kb on + strand, within HP15_283 at 274.088 kb on - strand at 274.135 kb on + strand at 274.222 kb on + strand at 274.231 kb on - strand at 274.248 kb on - strand at 274.323 kb on + strand, within HP15_284 at 274.407 kb on + strand, within HP15_284 at 274.410 kb on - strand, within HP15_284 at 274.410 kb on - strand, within HP15_284 at 274.410 kb on - strand, within HP15_284 at 274.425 kb on - strand, within HP15_284 at 274.573 kb on - strand, within HP15_284 at 274.612 kb on + strand, within HP15_284 at 274.612 kb on + strand, within HP15_284 at 274.620 kb on - strand, within HP15_284 at 274.786 kb on - strand, within HP15_284 at 274.983 kb on - strand, within HP15_284 at 275.026 kb on + strand, within HP15_284 at 275.074 kb on - strand, within HP15_284 at 275.365 kb on - strand at 275.365 kb on - strand at 275.365 kb on - strand at 275.418 kb on - strand at 275.624 kb on + strand, within HP15_285 at 275.632 kb on - strand, within HP15_285 at 275.699 kb on - strand, within HP15_285 at 275.699 kb on - strand, within HP15_285 at 275.851 kb on + strand, within HP15_285 at 275.860 kb on - strand, within HP15_285 at 275.993 kb on + strand, within HP15_285 at 276.088 kb on + strand, within HP15_285 at 276.132 kb on - strand, within HP15_285 at 276.147 kb on + strand, within HP15_285 at 276.180 kb on + strand, within HP15_285 at 276.195 kb on + strand, within HP15_285 at 276.198 kb on - strand, within HP15_285 at 276.198 kb on - strand, within HP15_285 at 276.203 kb on - strand, within HP15_285 at 276.226 kb on - strand, within HP15_285 at 276.246 kb on + strand, within HP15_285
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 273,282 - HP15_282 0.44 +0.3 273,350 + HP15_282 0.59 -0.4 273,354 - HP15_282 0.60 -0.3 273,379 - HP15_282 0.65 +0.0 273,404 + HP15_282 0.71 +0.3 273,409 + HP15_282 0.72 +0.4 273,417 - HP15_282 0.73 +1.3 273,417 - HP15_282 0.73 -0.1 273,417 - HP15_282 0.73 +0.1 273,419 + HP15_282 0.74 +0.3 273,419 + HP15_282 0.74 -0.1 273,422 - HP15_282 0.75 -0.3 273,428 + HP15_282 0.76 +1.1 273,434 - HP15_282 0.77 -1.1 273,436 - HP15_282 0.78 +0.4 273,483 - HP15_282 0.88 -0.4 273,701 + HP15_283 0.27 -2.2 273,709 - HP15_283 0.28 -4.8 273,709 - HP15_283 0.28 -4.7 273,854 - HP15_283 0.52 -5.0 273,917 + HP15_283 0.63 -0.8 273,932 + HP15_283 0.65 -3.8 273,932 + HP15_283 0.65 -3.4 274,088 - -4.8 274,135 + -1.7 274,222 + -7.8 274,231 - -3.9 274,248 - -4.1 274,323 + HP15_284 0.16 -3.5 274,407 + HP15_284 0.24 -3.8 274,410 - HP15_284 0.24 -2.4 274,410 - HP15_284 0.24 -5.2 274,410 - HP15_284 0.24 -11.0 274,425 - HP15_284 0.25 -4.5 274,573 - HP15_284 0.38 -2.3 274,612 + HP15_284 0.41 -2.4 274,612 + HP15_284 0.41 -5.4 274,620 - HP15_284 0.42 -2.9 274,786 - HP15_284 0.57 -4.9 274,983 - HP15_284 0.74 -2.2 275,026 + HP15_284 0.77 -4.7 275,074 - HP15_284 0.82 -3.1 275,365 - +0.1 275,365 - -2.1 275,365 - -3.1 275,418 - -1.2 275,624 + HP15_285 0.11 -1.6 275,632 - HP15_285 0.11 +0.5 275,699 - HP15_285 0.15 +0.6 275,699 - HP15_285 0.15 -0.3 275,851 + HP15_285 0.22 -0.0 275,860 - HP15_285 0.23 -0.6 275,993 + HP15_285 0.30 -0.5 276,088 + HP15_285 0.34 +0.8 276,132 - HP15_285 0.37 -0.8 276,147 + HP15_285 0.37 +0.4 276,180 + HP15_285 0.39 +0.4 276,195 + HP15_285 0.40 -0.9 276,198 - HP15_285 0.40 +0.1 276,198 - HP15_285 0.40 +0.3 276,203 - HP15_285 0.40 +0.0 276,226 - HP15_285 0.41 -0.3 276,246 + HP15_285 0.42 +1.1
Or see this region's nucleotide sequence