Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_271 and HP15_272 are separated by 6 nucleotides HP15_272 and HP15_273 are separated by 178 nucleotides
HP15_271: HP15_271 - transcriptional regulator, AraC family protein, at 261,941 to 262,978
_271
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
HP15_273: HP15_273 - spermidine synthase, at 265,074 to 265,955
_273
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 262.028 kb on - strand at 262.111 kb on + strand, within HP15_271 at 262.111 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.152 kb on - strand, within HP15_271 at 262.189 kb on - strand, within HP15_271 at 262.261 kb on + strand, within HP15_271 at 262.269 kb on - strand, within HP15_271 at 262.353 kb on + strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.385 kb on - strand, within HP15_271 at 262.528 kb on - strand, within HP15_271 at 262.572 kb on + strand, within HP15_271 at 262.619 kb on - strand, within HP15_271 at 262.684 kb on + strand, within HP15_271 at 262.692 kb on - strand, within HP15_271 at 262.777 kb on - strand, within HP15_271 at 262.802 kb on + strand, within HP15_271 at 262.830 kb on + strand, within HP15_271 at 262.838 kb on - strand, within HP15_271 at 262.848 kb on + strand, within HP15_271 at 262.891 kb on - strand at 262.893 kb on - strand at 262.893 kb on - strand at 263.034 kb on - strand at 263.134 kb on - strand at 263.323 kb on - strand, within HP15_272 at 263.323 kb on - strand, within HP15_272 at 263.447 kb on + strand, within HP15_272 at 263.452 kb on + strand, within HP15_272 at 263.627 kb on + strand, within HP15_272 at 263.635 kb on - strand, within HP15_272 at 263.637 kb on - strand, within HP15_272 at 263.641 kb on - strand, within HP15_272 at 263.692 kb on - strand, within HP15_272 at 263.862 kb on + strand, within HP15_272 at 263.890 kb on + strand, within HP15_272 at 263.967 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.105 kb on + strand, within HP15_272 at 264.149 kb on + strand, within HP15_272 at 264.167 kb on + strand, within HP15_272 at 264.342 kb on - strand, within HP15_272 at 264.514 kb on + strand, within HP15_272 at 264.629 kb on + strand, within HP15_272 at 264.658 kb on - strand, within HP15_272 at 264.712 kb on - strand at 264.842 kb on + strand at 264.862 kb on - strand at 264.919 kb on - strand at 265.208 kb on - strand, within HP15_273 at 265.301 kb on - strand, within HP15_273 at 265.400 kb on + strand, within HP15_273 at 265.465 kb on + strand, within HP15_273 at 265.524 kb on + strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.707 kb on + strand, within HP15_273 at 265.722 kb on + strand, within HP15_273 at 265.731 kb on - strand, within HP15_273 at 265.734 kb on + strand, within HP15_273 at 265.742 kb on - strand, within HP15_273 at 265.782 kb on + strand, within HP15_273 at 265.789 kb on - strand, within HP15_273 at 265.895 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 262,028 - -0.1 262,111 + HP15_271 0.16 -1.5 262,111 + HP15_271 0.16 -2.3 262,118 + HP15_271 0.17 -0.5 262,118 + HP15_271 0.17 -0.2 262,118 + HP15_271 0.17 +0.5 262,119 - HP15_271 0.17 +1.5 262,119 - HP15_271 0.17 -0.3 262,119 - HP15_271 0.17 -0.1 262,119 - HP15_271 0.17 +0.3 262,152 - HP15_271 0.20 -0.4 262,189 - HP15_271 0.24 -0.5 262,261 + HP15_271 0.31 +0.4 262,269 - HP15_271 0.32 -2.8 262,353 + HP15_271 0.40 +0.5 262,361 - HP15_271 0.40 +0.2 262,361 - HP15_271 0.40 +0.1 262,385 - HP15_271 0.43 -0.9 262,528 - HP15_271 0.57 -0.2 262,572 + HP15_271 0.61 -2.0 262,619 - HP15_271 0.65 -0.3 262,684 + HP15_271 0.72 +0.5 262,692 - HP15_271 0.72 +0.4 262,777 - HP15_271 0.81 +1.0 262,802 + HP15_271 0.83 -0.1 262,830 + HP15_271 0.86 -0.7 262,838 - HP15_271 0.86 +0.6 262,848 + HP15_271 0.87 +0.3 262,891 - +0.6 262,893 - +0.3 262,893 - +0.0 263,034 - +3.6 263,134 - +1.5 263,323 - HP15_272 0.18 +1.9 263,323 - HP15_272 0.18 -0.3 263,447 + HP15_272 0.24 +0.3 263,452 + HP15_272 0.24 -0.4 263,627 + HP15_272 0.34 +1.7 263,635 - HP15_272 0.34 -0.8 263,637 - HP15_272 0.34 +0.1 263,641 - HP15_272 0.34 +0.6 263,692 - HP15_272 0.37 +0.6 263,862 + HP15_272 0.46 +0.3 263,890 + HP15_272 0.47 -0.3 263,967 + HP15_272 0.51 +0.6 264,092 + HP15_272 0.58 +0.9 264,092 + HP15_272 0.58 -0.2 264,105 + HP15_272 0.59 +0.8 264,149 + HP15_272 0.61 +1.2 264,167 + HP15_272 0.62 +1.2 264,342 - HP15_272 0.71 +2.6 264,514 + HP15_272 0.80 -0.6 264,629 + HP15_272 0.86 -1.6 264,658 - HP15_272 0.88 +0.9 264,712 - -0.0 264,842 + -0.0 264,862 - +0.5 264,919 - +0.1 265,208 - HP15_273 0.15 -0.4 265,301 - HP15_273 0.26 -0.1 265,400 + HP15_273 0.37 +1.3 265,465 + HP15_273 0.44 +1.7 265,524 + HP15_273 0.51 -0.3 265,542 - HP15_273 0.53 +0.1 265,542 - HP15_273 0.53 +0.6 265,707 + HP15_273 0.72 +0.3 265,722 + HP15_273 0.73 +0.3 265,731 - HP15_273 0.74 -0.7 265,734 + HP15_273 0.75 -0.4 265,742 - HP15_273 0.76 -0.3 265,782 + HP15_273 0.80 +0.3 265,789 - HP15_273 0.81 +0.7 265,895 + +0.4
Or see this region's nucleotide sequence