Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2656 and HP15_2657 are separated by 90 nucleotides HP15_2657 and HP15_2658 are separated by 5 nucleotides HP15_2658 and HP15_2659 are separated by 161 nucleotides
HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194
_2656
HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905
_2657
HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582
_2658
HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data) , at 2,808,744 to 2,810,270
_2659
Position (kb)
2807
2808
2809 Strain fitness (log2 ratio)
-2
-1
0
1 at 2807.041 kb on + strand at 2807.144 kb on + strand at 2807.144 kb on + strand at 2807.280 kb on - strand at 2808.016 kb on - strand, within HP15_2658 at 2808.102 kb on + strand, within HP15_2658 at 2808.108 kb on - strand, within HP15_2658 at 2808.139 kb on - strand, within HP15_2658 at 2808.144 kb on - strand, within HP15_2658 at 2808.170 kb on - strand, within HP15_2658 at 2808.319 kb on - strand, within HP15_2658 at 2808.425 kb on - strand, within HP15_2658 at 2808.537 kb on - strand at 2808.607 kb on + strand at 2808.655 kb on + strand at 2808.663 kb on - strand at 2808.868 kb on + strand at 2809.036 kb on - strand, within HP15_2659 at 2809.078 kb on - strand, within HP15_2659 at 2809.108 kb on + strand, within HP15_2659 at 2809.357 kb on + strand, within HP15_2659
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,807,041 + -0.0 2,807,144 + +0.7 2,807,144 + -1.4 2,807,280 - +0.5 2,808,016 - HP15_2658 0.16 -0.2 2,808,102 + HP15_2658 0.28 +0.7 2,808,108 - HP15_2658 0.29 -0.6 2,808,139 - HP15_2658 0.34 +1.0 2,808,144 - HP15_2658 0.35 +1.1 2,808,170 - HP15_2658 0.39 +1.0 2,808,319 - HP15_2658 0.61 +1.1 2,808,425 - HP15_2658 0.76 +0.7 2,808,537 - +0.6 2,808,607 + +0.3 2,808,655 + -2.0 2,808,663 - +1.4 2,808,868 + +0.2 2,809,036 - HP15_2659 0.19 -0.7 2,809,078 - HP15_2659 0.22 -0.1 2,809,108 + HP15_2659 0.24 +0.5 2,809,357 + HP15_2659 0.40 -0.2
Or see this region's nucleotide sequence