Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_262 and HP15_263 overlap by 1 nucleotides HP15_263 and HP15_264 are separated by 81 nucleotides HP15_264 and HP15_265 overlap by 15 nucleotides
HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223
_262
HP15_263: HP15_263 - thioesterase superfamily protein, at 253,223 to 253,684
_263
HP15_264: HP15_264 - NADPH:quinone reductase and related Zn-dependent oxidoreductase, at 253,766 to 254,749
_264
HP15_265: HP15_265 - sodium/hydrogen exchanger family protein, at 254,735 to 256,612
_265
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.793 kb on - strand, within HP15_262 at 252.909 kb on + strand, within HP15_262 at 252.958 kb on - strand, within HP15_262 at 253.007 kb on - strand, within HP15_262 at 253.068 kb on + strand, within HP15_262 at 253.076 kb on - strand, within HP15_262 at 253.140 kb on + strand at 253.280 kb on - strand, within HP15_263 at 253.526 kb on - strand, within HP15_263 at 253.550 kb on + strand, within HP15_263 at 253.625 kb on + strand, within HP15_263 at 253.676 kb on + strand at 253.705 kb on - strand at 253.819 kb on - strand at 253.908 kb on + strand, within HP15_264 at 253.908 kb on + strand, within HP15_264 at 253.914 kb on + strand, within HP15_264 at 253.922 kb on - strand, within HP15_264 at 254.031 kb on + strand, within HP15_264 at 254.039 kb on - strand, within HP15_264 at 254.054 kb on - strand, within HP15_264 at 254.111 kb on - strand, within HP15_264 at 254.188 kb on - strand, within HP15_264 at 254.257 kb on + strand, within HP15_264 at 254.260 kb on - strand, within HP15_264 at 254.318 kb on + strand, within HP15_264 at 254.318 kb on + strand, within HP15_264 at 254.411 kb on + strand, within HP15_264 at 254.419 kb on + strand, within HP15_264 at 254.427 kb on - strand, within HP15_264 at 254.427 kb on - strand, within HP15_264 at 254.438 kb on + strand, within HP15_264 at 254.446 kb on - strand, within HP15_264 at 254.477 kb on + strand, within HP15_264 at 254.495 kb on + strand, within HP15_264 at 254.512 kb on + strand, within HP15_264 at 254.606 kb on - strand, within HP15_264 at 254.674 kb on + strand at 254.689 kb on + strand at 254.806 kb on - strand at 254.830 kb on - strand at 254.833 kb on + strand at 254.841 kb on - strand at 254.843 kb on + strand at 254.932 kb on + strand, within HP15_265 at 255.011 kb on - strand, within HP15_265 at 255.011 kb on - strand, within HP15_265 at 255.026 kb on + strand, within HP15_265 at 255.034 kb on - strand, within HP15_265 at 255.034 kb on - strand, within HP15_265 at 255.058 kb on + strand, within HP15_265 at 255.125 kb on - strand, within HP15_265 at 255.241 kb on - strand, within HP15_265 at 255.418 kb on - strand, within HP15_265 at 255.418 kb on - strand, within HP15_265 at 255.454 kb on + strand, within HP15_265 at 255.475 kb on + strand, within HP15_265
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 252,793 - HP15_262 0.60 -0.5 252,909 + HP15_262 0.71 -0.1 252,958 - HP15_262 0.76 -1.3 253,007 - HP15_262 0.80 +0.7 253,068 + HP15_262 0.86 +0.6 253,076 - HP15_262 0.86 -0.5 253,140 + -0.1 253,280 - HP15_263 0.12 -0.0 253,526 - HP15_263 0.66 -0.2 253,550 + HP15_263 0.71 +0.6 253,625 + HP15_263 0.87 -0.0 253,676 + +0.1 253,705 - +1.0 253,819 - +0.4 253,908 + HP15_264 0.14 -0.3 253,908 + HP15_264 0.14 +0.2 253,914 + HP15_264 0.15 +2.5 253,922 - HP15_264 0.16 -0.7 254,031 + HP15_264 0.27 +1.9 254,039 - HP15_264 0.28 +1.2 254,054 - HP15_264 0.29 +0.8 254,111 - HP15_264 0.35 +0.2 254,188 - HP15_264 0.43 +0.5 254,257 + HP15_264 0.50 -0.2 254,260 - HP15_264 0.50 +1.6 254,318 + HP15_264 0.56 +1.0 254,318 + HP15_264 0.56 +0.5 254,411 + HP15_264 0.66 +0.7 254,419 + HP15_264 0.66 -0.8 254,427 - HP15_264 0.67 +0.6 254,427 - HP15_264 0.67 -0.0 254,438 + HP15_264 0.68 -0.1 254,446 - HP15_264 0.69 +0.5 254,477 + HP15_264 0.72 +0.6 254,495 + HP15_264 0.74 -0.8 254,512 + HP15_264 0.76 +0.3 254,606 - HP15_264 0.85 +0.3 254,674 + -1.2 254,689 + +0.6 254,806 - +0.5 254,830 - -0.0 254,833 + +0.7 254,841 - +0.0 254,843 + +0.3 254,932 + HP15_265 0.10 +0.8 255,011 - HP15_265 0.15 -2.0 255,011 - HP15_265 0.15 +0.8 255,026 + HP15_265 0.15 +0.2 255,034 - HP15_265 0.16 -0.1 255,034 - HP15_265 0.16 -1.5 255,058 + HP15_265 0.17 +0.6 255,125 - HP15_265 0.21 +1.1 255,241 - HP15_265 0.27 -0.3 255,418 - HP15_265 0.36 +0.0 255,418 - HP15_265 0.36 -0.2 255,454 + HP15_265 0.38 -0.4 255,475 + HP15_265 0.39 +1.5
Or see this region's nucleotide sequence