Strain Fitness in Marinobacter adhaerens HP15 around HP15_261

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_259 and HP15_261 are separated by 101 nucleotidesHP15_261 and HP15_260 are separated by 18 nucleotidesHP15_260 and HP15_262 are separated by 101 nucleotides HP15_259: HP15_259 - AraC-type DNA-binding domain-containing protein, at 249,773 to 250,849 _259 HP15_261: HP15_261 - hypothetical protein, at 250,951 to 251,220 _261 HP15_260: HP15_260 - hydrolase, alpha/beta fold family protein, at 251,239 to 252,036 _260 HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223 _262 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 249.954 kb on - strand, within HP15_259at 250.006 kb on - strand, within HP15_259at 250.033 kb on - strand, within HP15_259at 250.052 kb on - strand, within HP15_259at 250.057 kb on + strand, within HP15_259at 250.161 kb on + strand, within HP15_259at 250.190 kb on - strand, within HP15_259at 250.397 kb on + strand, within HP15_259at 250.405 kb on - strand, within HP15_259at 250.528 kb on + strand, within HP15_259at 250.554 kb on - strand, within HP15_259at 250.808 kb on + strandat 250.813 kb on + strandat 250.816 kb on - strandat 250.816 kb on - strandat 250.831 kb on - strandat 250.876 kb on - strandat 250.911 kb on + strandat 251.187 kb on + strand, within HP15_261at 251.195 kb on - strandat 251.210 kb on + strandat 251.235 kb on + strandat 251.311 kb on + strandat 251.322 kb on + strand, within HP15_260at 251.575 kb on - strand, within HP15_260at 251.605 kb on + strand, within HP15_260at 251.624 kb on + strand, within HP15_260at 251.629 kb on + strand, within HP15_260at 251.637 kb on - strand, within HP15_260at 251.670 kb on + strand, within HP15_260at 251.832 kb on + strand, within HP15_260at 251.832 kb on + strand, within HP15_260at 251.941 kb on - strand, within HP15_260at 251.965 kb on - strandat 251.993 kb on - strandat 252.044 kb on - strandat 252.044 kb on - strandat 252.085 kb on - strandat 252.179 kb on + strandat 252.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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249,954 - HP15_259 0.17 +0.4
250,006 - HP15_259 0.22 +0.1
250,033 - HP15_259 0.24 -0.5
250,052 - HP15_259 0.26 +0.3
250,057 + HP15_259 0.26 +0.4
250,161 + HP15_259 0.36 +0.0
250,190 - HP15_259 0.39 +0.4
250,397 + HP15_259 0.58 +0.9
250,405 - HP15_259 0.59 +0.5
250,528 + HP15_259 0.70 +0.4
250,554 - HP15_259 0.73 +0.4
250,808 + -0.2
250,813 + +0.7
250,816 - +0.2
250,816 - +0.4
250,831 - +0.5
250,876 - +0.9
250,911 + +0.3
251,187 + HP15_261 0.87 +0.5
251,195 - -0.1
251,210 + +0.1
251,235 + +0.3
251,311 + +3.3
251,322 + HP15_260 0.10 -0.2
251,575 - HP15_260 0.42 +0.7
251,605 + HP15_260 0.46 -0.4
251,624 + HP15_260 0.48 -1.1
251,629 + HP15_260 0.49 -1.9
251,637 - HP15_260 0.50 -0.0
251,670 + HP15_260 0.54 +0.2
251,832 + HP15_260 0.74 -0.8
251,832 + HP15_260 0.74 +0.6
251,941 - HP15_260 0.88 +0.1
251,965 - -0.0
251,993 - -0.7
252,044 - +0.3
252,044 - +0.3
252,085 - +0.0
252,179 + -0.6
252,187 - -0.0

Or see this region's nucleotide sequence