Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2507 and HP15_2508 are separated by 15 nucleotides HP15_2508 and HP15_2509 are separated by 161 nucleotides HP15_2509 and HP15_2510 overlap by 26 nucleotides
HP15_2507: HP15_2507 - ribosome-associated GTPase, at 2,648,025 to 2,649,080
_2507
HP15_2508: HP15_2508 - OmpA/MotB domain protein, at 2,649,096 to 2,649,836
_2508
HP15_2509: HP15_2509 - hypothetical protein, at 2,649,998 to 2,650,111
_2509
HP15_2510: HP15_2510 - flagellar motor protein MotA, at 2,650,086 to 2,650,937
_2510
Position (kb)
2649
2650 Strain fitness (log2 ratio)
-2
-1
0
1 at 2648.144 kb on + strand, within HP15_2507 at 2648.157 kb on - strand, within HP15_2507 at 2649.311 kb on - strand, within HP15_2508 at 2649.339 kb on - strand, within HP15_2508 at 2649.368 kb on + strand, within HP15_2508 at 2649.403 kb on + strand, within HP15_2508 at 2649.474 kb on - strand, within HP15_2508 at 2649.487 kb on - strand, within HP15_2508 at 2649.514 kb on + strand, within HP15_2508 at 2649.577 kb on + strand, within HP15_2508 at 2649.602 kb on - strand, within HP15_2508 at 2649.649 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.667 kb on + strand, within HP15_2508 at 2649.733 kb on - strand, within HP15_2508 at 2649.830 kb on + strand at 2650.068 kb on + strand, within HP15_2509 at 2650.076 kb on - strand, within HP15_2509 at 2650.221 kb on + strand, within HP15_2510 at 2650.284 kb on + strand, within HP15_2510 at 2650.325 kb on - strand, within HP15_2510 at 2650.468 kb on - strand, within HP15_2510 at 2650.556 kb on - strand, within HP15_2510 at 2650.602 kb on - strand, within HP15_2510 at 2650.687 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.809 kb on + strand, within HP15_2510 at 2650.817 kb on - strand, within HP15_2510
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,648,144 + HP15_2507 0.11 -1.4 2,648,157 - HP15_2507 0.12 +1.6 2,649,311 - HP15_2508 0.29 +0.7 2,649,339 - HP15_2508 0.33 +1.6 2,649,368 + HP15_2508 0.37 +0.3 2,649,403 + HP15_2508 0.41 +0.2 2,649,474 - HP15_2508 0.51 -0.1 2,649,487 - HP15_2508 0.53 +0.2 2,649,514 + HP15_2508 0.56 -0.0 2,649,577 + HP15_2508 0.65 +0.4 2,649,602 - HP15_2508 0.68 -0.0 2,649,649 + HP15_2508 0.75 -1.1 2,649,667 + HP15_2508 0.77 -1.2 2,649,667 + HP15_2508 0.77 -0.4 2,649,733 - HP15_2508 0.86 +0.4 2,649,830 + +0.3 2,650,068 + HP15_2509 0.61 +0.0 2,650,076 - HP15_2509 0.68 +1.1 2,650,221 + HP15_2510 0.16 -0.5 2,650,284 + HP15_2510 0.23 -0.0 2,650,325 - HP15_2510 0.28 +0.2 2,650,468 - HP15_2510 0.45 -1.1 2,650,556 - HP15_2510 0.55 -0.8 2,650,602 - HP15_2510 0.61 +0.0 2,650,687 + HP15_2510 0.71 -0.7 2,650,809 + HP15_2510 0.85 -0.4 2,650,809 + HP15_2510 0.85 +0.5 2,650,817 - HP15_2510 0.86 -2.5
Or see this region's nucleotide sequence