Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_248 and HP15_249 are separated by 16 nucleotides HP15_249 and HP15_250 are separated by 28 nucleotides HP15_250 and HP15_251 are separated by 68 nucleotides
HP15_248: HP15_248 - diaminopimelate epimerase, at 236,824 to 237,738
_248
HP15_249: HP15_249 - protein containing DUF484, at 237,755 to 238,501
_249
HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462
_250
HP15_251: HP15_251 - diguanylate cyclase, at 239,531 to 241,024
_251
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.667 kb on + strand at 237.677 kb on - strand at 237.748 kb on - strand at 237.751 kb on + strand at 237.875 kb on - strand, within HP15_249 at 237.935 kb on - strand, within HP15_249 at 237.942 kb on + strand, within HP15_249 at 238.020 kb on - strand, within HP15_249 at 238.153 kb on + strand, within HP15_249 at 238.177 kb on - strand, within HP15_249 at 238.222 kb on + strand, within HP15_249 at 238.381 kb on + strand, within HP15_249 at 238.520 kb on - strand at 238.530 kb on - strand at 238.929 kb on - strand, within HP15_250 at 239.026 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.102 kb on + strand, within HP15_250 at 239.112 kb on - strand, within HP15_250 at 239.193 kb on + strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.354 kb on + strand, within HP15_250 at 239.362 kb on - strand, within HP15_250 at 239.548 kb on - strand at 239.605 kb on - strand at 239.630 kb on - strand at 239.663 kb on + strand at 239.844 kb on + strand, within HP15_251 at 239.865 kb on - strand, within HP15_251 at 239.878 kb on + strand, within HP15_251 at 239.883 kb on + strand, within HP15_251 at 239.922 kb on - strand, within HP15_251 at 240.021 kb on + strand, within HP15_251 at 240.021 kb on + strand, within HP15_251 at 240.021 kb on + strand, within HP15_251 at 240.029 kb on - strand, within HP15_251 at 240.029 kb on - strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.112 kb on + strand, within HP15_251 at 240.112 kb on - strand, within HP15_251 at 240.112 kb on - strand, within HP15_251 at 240.125 kb on - strand, within HP15_251 at 240.135 kb on - strand, within HP15_251 at 240.206 kb on + strand, within HP15_251 at 240.214 kb on + strand, within HP15_251 at 240.233 kb on + strand, within HP15_251 at 240.236 kb on - strand, within HP15_251 at 240.236 kb on - strand, within HP15_251 at 240.246 kb on - strand, within HP15_251 at 240.263 kb on - strand, within HP15_251 at 240.327 kb on + strand, within HP15_251 at 240.329 kb on - strand, within HP15_251 at 240.357 kb on - strand, within HP15_251 at 240.436 kb on + strand, within HP15_251 at 240.444 kb on - strand, within HP15_251 at 240.444 kb on - strand, within HP15_251 at 240.451 kb on + strand, within HP15_251
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 237,667 + -3.4 237,677 - +0.2 237,748 - -0.1 237,751 + -0.4 237,875 - HP15_249 0.16 -2.0 237,935 - HP15_249 0.24 -0.2 237,942 + HP15_249 0.25 -0.2 238,020 - HP15_249 0.35 -0.1 238,153 + HP15_249 0.53 -1.0 238,177 - HP15_249 0.56 -1.8 238,222 + HP15_249 0.63 +1.0 238,381 + HP15_249 0.84 -0.2 238,520 - +0.5 238,530 - -1.5 238,929 - HP15_250 0.43 +0.0 239,026 - HP15_250 0.53 -0.1 239,031 - HP15_250 0.54 -1.2 239,031 - HP15_250 0.54 -2.6 239,102 + HP15_250 0.61 -1.9 239,112 - HP15_250 0.62 -1.6 239,193 + HP15_250 0.71 -0.8 239,330 - HP15_250 0.86 -0.2 239,330 - HP15_250 0.86 -1.6 239,354 + HP15_250 0.88 -1.6 239,362 - HP15_250 0.89 +0.8 239,548 - +0.7 239,605 - -0.2 239,630 - +0.2 239,663 + -1.5 239,844 + HP15_251 0.21 +0.3 239,865 - HP15_251 0.22 +0.8 239,878 + HP15_251 0.23 -1.4 239,883 + HP15_251 0.24 -1.1 239,922 - HP15_251 0.26 +0.9 240,021 + HP15_251 0.33 -0.1 240,021 + HP15_251 0.33 -0.1 240,021 + HP15_251 0.33 -0.4 240,029 - HP15_251 0.33 +0.5 240,029 - HP15_251 0.33 -1.1 240,104 + HP15_251 0.38 -1.2 240,104 + HP15_251 0.38 +0.0 240,104 + HP15_251 0.38 -2.0 240,104 + HP15_251 0.38 +0.2 240,104 + HP15_251 0.38 +0.1 240,112 + HP15_251 0.39 -1.8 240,112 - HP15_251 0.39 +0.1 240,112 - HP15_251 0.39 +0.9 240,125 - HP15_251 0.40 +0.8 240,135 - HP15_251 0.40 +0.1 240,206 + HP15_251 0.45 -0.1 240,214 + HP15_251 0.46 -0.1 240,233 + HP15_251 0.47 +0.6 240,236 - HP15_251 0.47 +1.3 240,236 - HP15_251 0.47 -0.3 240,246 - HP15_251 0.48 +0.5 240,263 - HP15_251 0.49 +0.4 240,327 + HP15_251 0.53 -1.2 240,329 - HP15_251 0.53 -1.5 240,357 - HP15_251 0.55 +0.6 240,436 + HP15_251 0.61 +1.1 240,444 - HP15_251 0.61 +0.2 240,444 - HP15_251 0.61 +0.9 240,451 + HP15_251 0.62 +0.6
Or see this region's nucleotide sequence