Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2400 and HP15_2401 overlap by 1 nucleotides HP15_2401 and HP15_2402 are separated by 32 nucleotides
HP15_2400: HP15_2400 - lipopolysaccharide biosynthesis protein, at 2,532,030 to 2,532,995
_2400
HP15_2401: HP15_2401 - polysaccharide biosynthesis/export protein, at 2,532,995 to 2,535,532
_2401
HP15_2402: HP15_2402 - conserved hypothetical protein, at 2,535,565 to 2,536,908
_2402
Position (kb)
2532
2533
2534
2535
2536 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2532.136 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.269 kb on - strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.604 kb on + strand, within HP15_2400 at 2532.631 kb on - strand, within HP15_2400 at 2532.666 kb on + strand, within HP15_2400 at 2532.795 kb on + strand, within HP15_2400 at 2532.803 kb on - strand, within HP15_2400 at 2532.805 kb on + strand, within HP15_2400 at 2532.926 kb on + strand at 2532.954 kb on - strand at 2533.041 kb on + strand at 2533.051 kb on + strand at 2533.219 kb on + strand at 2533.317 kb on - strand, within HP15_2401 at 2533.441 kb on - strand, within HP15_2401 at 2533.660 kb on + strand, within HP15_2401 at 2533.680 kb on - strand, within HP15_2401 at 2533.692 kb on + strand, within HP15_2401 at 2533.749 kb on + strand, within HP15_2401 at 2533.766 kb on + strand, within HP15_2401 at 2534.255 kb on - strand, within HP15_2401 at 2534.291 kb on + strand, within HP15_2401 at 2534.404 kb on + strand, within HP15_2401 at 2534.482 kb on - strand, within HP15_2401 at 2534.556 kb on + strand, within HP15_2401 at 2534.563 kb on + strand, within HP15_2401 at 2534.564 kb on - strand, within HP15_2401 at 2534.570 kb on + strand, within HP15_2401 at 2534.571 kb on - strand, within HP15_2401 at 2534.599 kb on + strand, within HP15_2401 at 2534.733 kb on + strand, within HP15_2401 at 2534.741 kb on - strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.755 kb on + strand, within HP15_2401 at 2534.861 kb on + strand, within HP15_2401 at 2534.870 kb on + strand, within HP15_2401 at 2534.878 kb on - strand, within HP15_2401 at 2534.938 kb on + strand, within HP15_2401 at 2534.943 kb on + strand, within HP15_2401 at 2535.011 kb on + strand, within HP15_2401 at 2535.011 kb on + strand, within HP15_2401 at 2535.175 kb on + strand, within HP15_2401 at 2535.361 kb on + strand at 2535.388 kb on - strand at 2535.390 kb on + strand at 2535.423 kb on + strand at 2535.423 kb on + strand at 2535.431 kb on - strand at 2535.431 kb on - strand at 2535.477 kb on - strand at 2535.480 kb on - strand at 2535.480 kb on - strand at 2535.491 kb on + strand at 2535.759 kb on + strand, within HP15_2402 at 2535.764 kb on + strand, within HP15_2402 at 2535.767 kb on - strand, within HP15_2402 at 2535.800 kb on - strand, within HP15_2402 at 2535.899 kb on - strand, within HP15_2402 at 2535.921 kb on + strand, within HP15_2402 at 2536.033 kb on + strand, within HP15_2402 at 2536.052 kb on + strand, within HP15_2402 at 2536.052 kb on + strand, within HP15_2402 at 2536.150 kb on - strand, within HP15_2402 at 2536.207 kb on - strand, within HP15_2402 at 2536.307 kb on + strand, within HP15_2402 at 2536.323 kb on - strand, within HP15_2402 at 2536.340 kb on + strand, within HP15_2402 at 2536.489 kb on + strand, within HP15_2402 at 2536.496 kb on - strand, within HP15_2402
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,532,136 + HP15_2400 0.11 -0.7 2,532,173 + HP15_2400 0.15 +0.2 2,532,173 + HP15_2400 0.15 -0.0 2,532,269 - HP15_2400 0.25 -1.0 2,532,534 + HP15_2400 0.52 -1.0 2,532,534 + HP15_2400 0.52 +0.1 2,532,604 + HP15_2400 0.59 -0.9 2,532,631 - HP15_2400 0.62 -0.2 2,532,666 + HP15_2400 0.66 -1.6 2,532,795 + HP15_2400 0.79 +0.0 2,532,803 - HP15_2400 0.80 -0.4 2,532,805 + HP15_2400 0.80 +0.7 2,532,926 + +2.7 2,532,954 - +0.6 2,533,041 + -0.1 2,533,051 + +0.0 2,533,219 + +0.6 2,533,317 - HP15_2401 0.13 +0.8 2,533,441 - HP15_2401 0.18 +1.3 2,533,660 + HP15_2401 0.26 -1.2 2,533,680 - HP15_2401 0.27 +2.2 2,533,692 + HP15_2401 0.27 +2.1 2,533,749 + HP15_2401 0.30 -0.1 2,533,766 + HP15_2401 0.30 +0.8 2,534,255 - HP15_2401 0.50 -0.3 2,534,291 + HP15_2401 0.51 -0.2 2,534,404 + HP15_2401 0.56 +0.8 2,534,482 - HP15_2401 0.59 +0.4 2,534,556 + HP15_2401 0.62 -2.1 2,534,563 + HP15_2401 0.62 +0.4 2,534,564 - HP15_2401 0.62 +1.1 2,534,570 + HP15_2401 0.62 +0.8 2,534,571 - HP15_2401 0.62 +1.3 2,534,599 + HP15_2401 0.63 +0.3 2,534,733 + HP15_2401 0.68 +0.8 2,534,741 - HP15_2401 0.69 +0.7 2,534,755 + HP15_2401 0.69 +0.7 2,534,755 + HP15_2401 0.69 +0.3 2,534,755 + HP15_2401 0.69 +1.6 2,534,755 + HP15_2401 0.69 +1.9 2,534,861 + HP15_2401 0.74 +0.2 2,534,870 + HP15_2401 0.74 +0.1 2,534,878 - HP15_2401 0.74 +0.4 2,534,938 + HP15_2401 0.77 +0.3 2,534,943 + HP15_2401 0.77 -0.0 2,535,011 + HP15_2401 0.79 +1.1 2,535,011 + HP15_2401 0.79 +0.5 2,535,175 + HP15_2401 0.86 +1.2 2,535,361 + +0.3 2,535,388 - -0.0 2,535,390 + +0.4 2,535,423 + +0.9 2,535,423 + +1.1 2,535,431 - +0.0 2,535,431 - +0.6 2,535,477 - +1.0 2,535,480 - -0.7 2,535,480 - +0.1 2,535,491 + -0.5 2,535,759 + HP15_2402 0.14 -0.0 2,535,764 + HP15_2402 0.15 -0.5 2,535,767 - HP15_2402 0.15 -0.7 2,535,800 - HP15_2402 0.17 +0.5 2,535,899 - HP15_2402 0.25 +0.3 2,535,921 + HP15_2402 0.26 -0.4 2,536,033 + HP15_2402 0.35 -0.5 2,536,052 + HP15_2402 0.36 +0.7 2,536,052 + HP15_2402 0.36 +0.6 2,536,150 - HP15_2402 0.44 -0.4 2,536,207 - HP15_2402 0.48 -1.5 2,536,307 + HP15_2402 0.55 +0.1 2,536,323 - HP15_2402 0.56 +1.1 2,536,340 + HP15_2402 0.58 -2.4 2,536,489 + HP15_2402 0.69 +0.8 2,536,496 - HP15_2402 0.69 +0.2
Or see this region's nucleotide sequence