Strain Fitness in Marinobacter adhaerens HP15 around HP15_2327

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2326 and HP15_2327 are separated by 15 nucleotidesHP15_2327 and HP15_2328 are separated by 251 nucleotides HP15_2326: HP15_2326 - flagellar MS-ring protein, at 2,444,875 to 2,446,584 _2326 HP15_2327: HP15_2327 - flagellar hook-basal body complex protein FliE, at 2,446,600 to 2,446,968 _2327 HP15_2328: HP15_2328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,447,220 to 2,448,686 _2328 Position (kb) 2446 2447Strain fitness (log2 ratio) -1 0 1 2at 2445.651 kb on + strand, within HP15_2326at 2445.659 kb on - strand, within HP15_2326at 2445.686 kb on - strand, within HP15_2326at 2445.778 kb on - strand, within HP15_2326at 2445.846 kb on + strand, within HP15_2326at 2445.928 kb on - strand, within HP15_2326at 2446.039 kb on + strand, within HP15_2326at 2446.039 kb on + strand, within HP15_2326at 2446.039 kb on + strand, within HP15_2326at 2446.125 kb on + strand, within HP15_2326at 2446.195 kb on - strand, within HP15_2326at 2446.316 kb on + strand, within HP15_2326at 2446.408 kb on + strand, within HP15_2326at 2446.465 kb on - strandat 2446.475 kb on + strandat 2446.526 kb on + strandat 2446.526 kb on + strandat 2446.587 kb on - strandat 2446.587 kb on - strandat 2446.638 kb on - strand, within HP15_2327at 2446.682 kb on - strand, within HP15_2327at 2446.708 kb on + strand, within HP15_2327at 2446.716 kb on - strand, within HP15_2327at 2446.817 kb on - strand, within HP15_2327at 2446.823 kb on - strand, within HP15_2327at 2446.882 kb on - strand, within HP15_2327at 2446.890 kb on + strand, within HP15_2327at 2446.900 kb on - strand, within HP15_2327at 2446.945 kb on + strandat 2446.951 kb on - strandat 2446.978 kb on - strandat 2447.223 kb on + strandat 2447.231 kb on - strandat 2447.276 kb on + strandat 2447.395 kb on - strand, within HP15_2328at 2447.448 kb on - strand, within HP15_2328at 2447.499 kb on - strand, within HP15_2328at 2447.535 kb on + strand, within HP15_2328at 2447.538 kb on - strand, within HP15_2328at 2447.540 kb on + strand, within HP15_2328at 2447.540 kb on + strand, within HP15_2328at 2447.548 kb on - strand, within HP15_2328at 2447.548 kb on - strand, within HP15_2328at 2447.601 kb on - strand, within HP15_2328at 2447.637 kb on - strand, within HP15_2328at 2447.897 kb on + strand, within HP15_2328

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,445,651 + HP15_2326 0.45 +0.4
2,445,659 - HP15_2326 0.46 -0.2
2,445,686 - HP15_2326 0.47 +1.0
2,445,778 - HP15_2326 0.53 +0.5
2,445,846 + HP15_2326 0.57 -0.3
2,445,928 - HP15_2326 0.62 +1.1
2,446,039 + HP15_2326 0.68 +0.0
2,446,039 + HP15_2326 0.68 +1.7
2,446,039 + HP15_2326 0.68 +0.3
2,446,125 + HP15_2326 0.73 +0.4
2,446,195 - HP15_2326 0.77 +0.5
2,446,316 + HP15_2326 0.84 -1.4
2,446,408 + HP15_2326 0.90 -0.6
2,446,465 - +0.7
2,446,475 + +1.2
2,446,526 + +0.3
2,446,526 + +0.2
2,446,587 - +0.1
2,446,587 - +0.3
2,446,638 - HP15_2327 0.10 +1.5
2,446,682 - HP15_2327 0.22 +0.6
2,446,708 + HP15_2327 0.29 +1.5
2,446,716 - HP15_2327 0.31 +0.5
2,446,817 - HP15_2327 0.59 +0.6
2,446,823 - HP15_2327 0.60 +0.9
2,446,882 - HP15_2327 0.76 -0.1
2,446,890 + HP15_2327 0.79 +1.2
2,446,900 - HP15_2327 0.81 +0.9
2,446,945 + +0.9
2,446,951 - +2.0
2,446,978 - +0.7
2,447,223 + +0.5
2,447,231 - +0.5
2,447,276 + +0.5
2,447,395 - HP15_2328 0.12 -0.0
2,447,448 - HP15_2328 0.16 -1.0
2,447,499 - HP15_2328 0.19 -0.0
2,447,535 + HP15_2328 0.21 +0.5
2,447,538 - HP15_2328 0.22 +0.6
2,447,540 + HP15_2328 0.22 -0.6
2,447,540 + HP15_2328 0.22 +0.4
2,447,548 - HP15_2328 0.22 +0.2
2,447,548 - HP15_2328 0.22 +0.5
2,447,601 - HP15_2328 0.26 -0.1
2,447,637 - HP15_2328 0.28 -0.3
2,447,897 + HP15_2328 0.46 -0.9

Or see this region's nucleotide sequence