Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2326 and HP15_2327 are separated by 15 nucleotides HP15_2327 and HP15_2328 are separated by 251 nucleotides
HP15_2326: HP15_2326 - flagellar MS-ring protein, at 2,444,875 to 2,446,584
_2326
HP15_2327: HP15_2327 - flagellar hook-basal body complex protein FliE, at 2,446,600 to 2,446,968
_2327
HP15_2328: HP15_2328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,447,220 to 2,448,686
_2328
Position (kb)
2446
2447 Strain fitness (log2 ratio)
-1
0
1
2 at 2445.651 kb on + strand, within HP15_2326 at 2445.659 kb on - strand, within HP15_2326 at 2445.686 kb on - strand, within HP15_2326 at 2445.778 kb on - strand, within HP15_2326 at 2445.846 kb on + strand, within HP15_2326 at 2445.928 kb on - strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.039 kb on + strand, within HP15_2326 at 2446.125 kb on + strand, within HP15_2326 at 2446.195 kb on - strand, within HP15_2326 at 2446.316 kb on + strand, within HP15_2326 at 2446.408 kb on + strand, within HP15_2326 at 2446.465 kb on - strand at 2446.475 kb on + strand at 2446.526 kb on + strand at 2446.526 kb on + strand at 2446.587 kb on - strand at 2446.587 kb on - strand at 2446.638 kb on - strand, within HP15_2327 at 2446.682 kb on - strand, within HP15_2327 at 2446.708 kb on + strand, within HP15_2327 at 2446.716 kb on - strand, within HP15_2327 at 2446.817 kb on - strand, within HP15_2327 at 2446.823 kb on - strand, within HP15_2327 at 2446.882 kb on - strand, within HP15_2327 at 2446.890 kb on + strand, within HP15_2327 at 2446.900 kb on - strand, within HP15_2327 at 2446.945 kb on + strand at 2446.951 kb on - strand at 2446.978 kb on - strand at 2447.223 kb on + strand at 2447.231 kb on - strand at 2447.276 kb on + strand at 2447.395 kb on - strand, within HP15_2328 at 2447.448 kb on - strand, within HP15_2328 at 2447.499 kb on - strand, within HP15_2328 at 2447.535 kb on + strand, within HP15_2328 at 2447.538 kb on - strand, within HP15_2328 at 2447.540 kb on + strand, within HP15_2328 at 2447.540 kb on + strand, within HP15_2328 at 2447.548 kb on - strand, within HP15_2328 at 2447.548 kb on - strand, within HP15_2328 at 2447.601 kb on - strand, within HP15_2328 at 2447.637 kb on - strand, within HP15_2328 at 2447.897 kb on + strand, within HP15_2328
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,445,651 + HP15_2326 0.45 +0.4 2,445,659 - HP15_2326 0.46 -0.2 2,445,686 - HP15_2326 0.47 +1.0 2,445,778 - HP15_2326 0.53 +0.5 2,445,846 + HP15_2326 0.57 -0.3 2,445,928 - HP15_2326 0.62 +1.1 2,446,039 + HP15_2326 0.68 +0.0 2,446,039 + HP15_2326 0.68 +1.7 2,446,039 + HP15_2326 0.68 +0.3 2,446,125 + HP15_2326 0.73 +0.4 2,446,195 - HP15_2326 0.77 +0.5 2,446,316 + HP15_2326 0.84 -1.4 2,446,408 + HP15_2326 0.90 -0.6 2,446,465 - +0.7 2,446,475 + +1.2 2,446,526 + +0.3 2,446,526 + +0.2 2,446,587 - +0.1 2,446,587 - +0.3 2,446,638 - HP15_2327 0.10 +1.5 2,446,682 - HP15_2327 0.22 +0.6 2,446,708 + HP15_2327 0.29 +1.5 2,446,716 - HP15_2327 0.31 +0.5 2,446,817 - HP15_2327 0.59 +0.6 2,446,823 - HP15_2327 0.60 +0.9 2,446,882 - HP15_2327 0.76 -0.1 2,446,890 + HP15_2327 0.79 +1.2 2,446,900 - HP15_2327 0.81 +0.9 2,446,945 + +0.9 2,446,951 - +2.0 2,446,978 - +0.7 2,447,223 + +0.5 2,447,231 - +0.5 2,447,276 + +0.5 2,447,395 - HP15_2328 0.12 -0.0 2,447,448 - HP15_2328 0.16 -1.0 2,447,499 - HP15_2328 0.19 -0.0 2,447,535 + HP15_2328 0.21 +0.5 2,447,538 - HP15_2328 0.22 +0.6 2,447,540 + HP15_2328 0.22 -0.6 2,447,540 + HP15_2328 0.22 +0.4 2,447,548 - HP15_2328 0.22 +0.2 2,447,548 - HP15_2328 0.22 +0.5 2,447,601 - HP15_2328 0.26 -0.1 2,447,637 - HP15_2328 0.28 -0.3 2,447,897 + HP15_2328 0.46 -0.9
Or see this region's nucleotide sequence