Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2317 and HP15_2318 overlap by 2 nucleotides HP15_2318 and HP15_2319 are separated by 23 nucleotides HP15_2319 and HP15_2320 overlap by 8 nucleotides
HP15_2317: HP15_2317 - flagellar hook-length control protein, at 2,437,234 to 2,438,424
_2317
HP15_2318: HP15_2318 - hypothetical protein, at 2,438,423 to 2,438,554
_2318
HP15_2319: HP15_2319 - Hpt domain protein, at 2,438,578 to 2,438,925
_2319
HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675
_2320
Position (kb)
2438
2439 Strain fitness (log2 ratio)
-1
0
1 at 2437.615 kb on - strand, within HP15_2317 at 2437.626 kb on + strand, within HP15_2317 at 2437.641 kb on + strand, within HP15_2317 at 2437.671 kb on + strand, within HP15_2317 at 2437.696 kb on + strand, within HP15_2317 at 2437.789 kb on - strand, within HP15_2317 at 2437.827 kb on + strand, within HP15_2317 at 2437.872 kb on - strand, within HP15_2317 at 2437.880 kb on + strand, within HP15_2317 at 2437.963 kb on + strand, within HP15_2317 at 2438.016 kb on + strand, within HP15_2317 at 2438.071 kb on + strand, within HP15_2317 at 2438.073 kb on - strand, within HP15_2317 at 2438.128 kb on + strand, within HP15_2317 at 2438.168 kb on + strand, within HP15_2317 at 2438.170 kb on + strand, within HP15_2317 at 2438.218 kb on + strand, within HP15_2317 at 2438.302 kb on + strand, within HP15_2317 at 2438.604 kb on - strand at 2438.778 kb on - strand, within HP15_2319 at 2438.786 kb on + strand, within HP15_2319 at 2438.788 kb on + strand, within HP15_2319 at 2438.834 kb on + strand, within HP15_2319 at 2438.842 kb on - strand, within HP15_2319 at 2438.853 kb on + strand, within HP15_2319 at 2438.876 kb on - strand, within HP15_2319 at 2439.037 kb on + strand at 2439.136 kb on - strand, within HP15_2320 at 2439.206 kb on - strand, within HP15_2320 at 2439.393 kb on + strand, within HP15_2320 at 2439.393 kb on + strand, within HP15_2320 at 2439.522 kb on + strand, within HP15_2320 at 2439.522 kb on - strand, within HP15_2320 at 2439.646 kb on + strand, within HP15_2320 at 2439.712 kb on + strand, within HP15_2320 at 2439.808 kb on + strand, within HP15_2320
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,437,615 - HP15_2317 0.32 +0.2 2,437,626 + HP15_2317 0.33 +0.2 2,437,641 + HP15_2317 0.34 +0.2 2,437,671 + HP15_2317 0.37 +0.2 2,437,696 + HP15_2317 0.39 +0.1 2,437,789 - HP15_2317 0.47 +0.6 2,437,827 + HP15_2317 0.50 +0.8 2,437,872 - HP15_2317 0.54 +0.8 2,437,880 + HP15_2317 0.54 -1.2 2,437,963 + HP15_2317 0.61 +0.5 2,438,016 + HP15_2317 0.66 +0.4 2,438,071 + HP15_2317 0.70 +1.6 2,438,073 - HP15_2317 0.70 +0.1 2,438,128 + HP15_2317 0.75 +0.1 2,438,168 + HP15_2317 0.78 +0.2 2,438,170 + HP15_2317 0.79 -0.1 2,438,218 + HP15_2317 0.83 +0.4 2,438,302 + HP15_2317 0.90 -1.3 2,438,604 - -0.1 2,438,778 - HP15_2319 0.57 +0.6 2,438,786 + HP15_2319 0.60 +0.2 2,438,788 + HP15_2319 0.60 +1.2 2,438,834 + HP15_2319 0.74 +0.2 2,438,842 - HP15_2319 0.76 +1.5 2,438,853 + HP15_2319 0.79 -0.2 2,438,876 - HP15_2319 0.86 +0.2 2,439,037 + -0.1 2,439,136 - HP15_2320 0.12 -1.0 2,439,206 - HP15_2320 0.16 +0.2 2,439,393 + HP15_2320 0.27 +0.1 2,439,393 + HP15_2320 0.27 +0.5 2,439,522 + HP15_2320 0.34 -0.1 2,439,522 - HP15_2320 0.34 -0.9 2,439,646 + HP15_2320 0.41 +0.6 2,439,712 + HP15_2320 0.45 -0.6 2,439,808 + HP15_2320 0.51 -0.2
Or see this region's nucleotide sequence