Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2295 and HP15_2296 are separated by 18 nucleotides HP15_2296 and HP15_2297 overlap by 7 nucleotides HP15_2297 and HP15_2298 are separated by 151 nucleotides
HP15_2295: HP15_2295 - flagellar motor protein MotD, at 2,416,713 to 2,417,495
_2295
HP15_2296: HP15_2296 - chemotaxis protein MotA, at 2,417,514 to 2,418,260
_2296
HP15_2297: HP15_2297 - response regulator receiver modulated CheB methylesterase, at 2,418,254 to 2,419,330
_2297
HP15_2298: HP15_2298 - chemotaxis histidine kinase, at 2,419,482 to 2,421,632
_2298
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2417.280 kb on - strand, within HP15_2295 at 2417.300 kb on + strand, within HP15_2295 at 2417.318 kb on - strand, within HP15_2295 at 2417.320 kb on + strand, within HP15_2295 at 2417.394 kb on - strand, within HP15_2295 at 2417.693 kb on + strand, within HP15_2296 at 2417.731 kb on - strand, within HP15_2296 at 2417.733 kb on - strand, within HP15_2296 at 2417.743 kb on - strand, within HP15_2296 at 2417.832 kb on + strand, within HP15_2296 at 2417.916 kb on + strand, within HP15_2296 at 2417.963 kb on + strand, within HP15_2296 at 2417.979 kb on + strand, within HP15_2296 at 2418.111 kb on - strand, within HP15_2296 at 2418.252 kb on + strand at 2418.397 kb on + strand, within HP15_2297 at 2418.488 kb on + strand, within HP15_2297 at 2418.534 kb on - strand, within HP15_2297 at 2418.626 kb on - strand, within HP15_2297 at 2418.635 kb on + strand, within HP15_2297 at 2418.824 kb on - strand, within HP15_2297 at 2419.041 kb on - strand, within HP15_2297 at 2419.079 kb on - strand, within HP15_2297 at 2419.135 kb on + strand, within HP15_2297 at 2419.143 kb on - strand, within HP15_2297 at 2419.164 kb on - strand, within HP15_2297 at 2419.347 kb on - strand at 2419.349 kb on + strand at 2419.657 kb on - strand at 2419.665 kb on - strand at 2419.803 kb on - strand, within HP15_2298 at 2419.885 kb on - strand, within HP15_2298 at 2419.908 kb on + strand, within HP15_2298 at 2419.937 kb on + strand, within HP15_2298 at 2419.961 kb on - strand, within HP15_2298 at 2420.008 kb on + strand, within HP15_2298 at 2420.018 kb on - strand, within HP15_2298 at 2420.026 kb on - strand, within HP15_2298 at 2420.026 kb on - strand, within HP15_2298 at 2420.028 kb on - strand, within HP15_2298 at 2420.030 kb on + strand, within HP15_2298 at 2420.128 kb on + strand, within HP15_2298
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,417,280 - HP15_2295 0.72 +0.2 2,417,300 + HP15_2295 0.75 +0.3 2,417,318 - HP15_2295 0.77 -1.0 2,417,320 + HP15_2295 0.78 +0.4 2,417,394 - HP15_2295 0.87 -0.1 2,417,693 + HP15_2296 0.24 -1.0 2,417,731 - HP15_2296 0.29 -0.4 2,417,733 - HP15_2296 0.29 +0.5 2,417,743 - HP15_2296 0.31 +0.2 2,417,832 + HP15_2296 0.43 +0.2 2,417,916 + HP15_2296 0.54 +3.1 2,417,963 + HP15_2296 0.60 -0.8 2,417,979 + HP15_2296 0.62 +0.2 2,418,111 - HP15_2296 0.80 +0.3 2,418,252 + +0.5 2,418,397 + HP15_2297 0.13 +0.8 2,418,488 + HP15_2297 0.22 +0.1 2,418,534 - HP15_2297 0.26 -0.1 2,418,626 - HP15_2297 0.35 +0.6 2,418,635 + HP15_2297 0.35 +0.3 2,418,824 - HP15_2297 0.53 -0.5 2,419,041 - HP15_2297 0.73 +0.4 2,419,079 - HP15_2297 0.77 +1.3 2,419,135 + HP15_2297 0.82 +0.7 2,419,143 - HP15_2297 0.83 +1.4 2,419,164 - HP15_2297 0.84 -0.1 2,419,347 - +1.6 2,419,349 + +1.9 2,419,657 - +0.5 2,419,665 - +0.2 2,419,803 - HP15_2298 0.15 +0.1 2,419,885 - HP15_2298 0.19 +0.2 2,419,908 + HP15_2298 0.20 +0.2 2,419,937 + HP15_2298 0.21 +0.8 2,419,961 - HP15_2298 0.22 +0.5 2,420,008 + HP15_2298 0.24 +0.5 2,420,018 - HP15_2298 0.25 +0.0 2,420,026 - HP15_2298 0.25 +0.5 2,420,026 - HP15_2298 0.25 +1.1 2,420,028 - HP15_2298 0.25 +1.7 2,420,030 + HP15_2298 0.25 +0.6 2,420,128 + HP15_2298 0.30 +0.2
Or see this region's nucleotide sequence