Strain Fitness in Marinobacter adhaerens HP15 around HP15_2262
Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 2 |
---|---|---|---|---|---|
remove | |||||
2,382,385 | - | HP15_2260 | 0.66 | -0.4 | |
2,382,451 | - | HP15_2260 | 0.71 | -1.5 | |
2,382,453 | + | HP15_2260 | 0.72 | +0.5 | |
2,382,461 | - | HP15_2260 | 0.72 | +0.5 | |
2,382,471 | - | HP15_2260 | 0.73 | -0.4 | |
2,382,490 | - | HP15_2260 | 0.75 | +0.3 | |
2,382,536 | + | HP15_2260 | 0.78 | +0.2 | |
2,382,546 | + | HP15_2260 | 0.79 | -0.9 | |
2,382,555 | + | HP15_2260 | 0.80 | +0.1 | |
2,382,610 | - | HP15_2260 | 0.84 | -0.5 | |
2,382,623 | - | HP15_2260 | 0.86 | -1.6 | |
2,382,624 | + | HP15_2260 | 0.86 | +0.2 | |
2,382,814 | - | +0.5 | |||
2,382,819 | - | -0.3 | |||
2,382,821 | + | -0.1 | |||
2,383,321 | - | +0.3 | |||
2,383,389 | - | +0.5 | |||
2,383,508 | + | HP15_2262 | 0.20 | -1.7 | |
2,383,806 | - | HP15_2262 | 0.64 | -2.5 | |
2,383,937 | + | HP15_2262 | 0.83 | -1.1 | |
2,383,996 | + | -1.1 | |||
2,384,151 | + | +1.4 | |||
2,384,210 | - | HP15_2263 | 0.12 | +0.2 | |
2,384,351 | + | HP15_2263 | 0.30 | +0.5 | |
2,384,383 | - | HP15_2263 | 0.34 | +0.4 | |
2,384,696 | + | HP15_2263 | 0.73 | +0.4 | |
2,384,937 | - | +1.2 | |||
2,384,954 | + | -0.8 | |||
2,384,954 | + | +0.5 | |||
2,384,955 | - | -0.4 |
Or see this region's nucleotide sequence