Strain Fitness in Marinobacter adhaerens HP15 around HP15_tRNA42

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2235 and HP15_tRNA42 are separated by 129 nucleotidesHP15_tRNA42 and HP15_tRNA43 are separated by 7 nucleotidesHP15_tRNA43 and HP15_2236 are separated by 113 nucleotides HP15_2235: HP15_2235 - 6-pyruvoyl tetrahydropterin synthase-like protein, at 2,355,702 to 2,356,553 _2235 HP15_tRNA42: HP15_tRNA42 - tRNA-Glu, at 2,356,683 to 2,356,758 _tRNA42 HP15_tRNA43: HP15_tRNA43 - tRNA-Ala, at 2,356,766 to 2,356,841 _tRNA43 HP15_2236: HP15_2236 - glutamyl-tRNA synthetase, at 2,356,955 to 2,358,376 _2236 Position (kb) 2356 2357Strain fitness (log2 ratio) -2 -1 0 1at 2355.934 kb on - strand, within HP15_2235at 2355.950 kb on + strand, within HP15_2235at 2356.073 kb on + strand, within HP15_2235at 2356.141 kb on - strand, within HP15_2235at 2356.166 kb on - strand, within HP15_2235at 2356.166 kb on - strand, within HP15_2235at 2356.233 kb on - strand, within HP15_2235at 2356.394 kb on + strand, within HP15_2235at 2356.733 kb on + strand, within HP15_tRNA42at 2356.734 kb on + strand, within HP15_tRNA42at 2356.884 kb on + strandat 2356.924 kb on + strandat 2356.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,355,934 - HP15_2235 0.27 +0.3
2,355,950 + HP15_2235 0.29 -0.7
2,356,073 + HP15_2235 0.44 -1.1
2,356,141 - HP15_2235 0.52 +0.9
2,356,166 - HP15_2235 0.54 +0.2
2,356,166 - HP15_2235 0.54 +0.7
2,356,233 - HP15_2235 0.62 -0.9
2,356,394 + HP15_2235 0.81 +0.1
2,356,733 + HP15_tRNA42 0.66 -1.1
2,356,734 + HP15_tRNA42 0.67 -2.2
2,356,884 + -0.9
2,356,924 + +0.0
2,356,964 + -2.1

Or see this region's nucleotide sequence