Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2093 and HP15_2094 are separated by 9 nucleotides HP15_2094 and HP15_2095 are separated by 159 nucleotides HP15_2095 and HP15_2096 are separated by 11 nucleotides HP15_2096 and HP15_2097 are separated by 95 nucleotides
HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613
_2093
HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207
_2094
HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581
_2095
HP15_2096: HP15_2096 - conserved hypothetical protein, at 2,195,593 to 2,196,063
_2096
HP15_2097: HP15_2097 - protease HtpX-like protein, at 2,196,159 to 2,197,040
_2097
Position (kb)
2194
2195
2196 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 2193.387 kb on - strand at 2193.621 kb on + strand at 2193.722 kb on - strand, within HP15_2094 at 2193.755 kb on + strand, within HP15_2094 at 2193.866 kb on + strand, within HP15_2094 at 2193.879 kb on - strand, within HP15_2094 at 2193.934 kb on - strand, within HP15_2094 at 2194.058 kb on - strand, within HP15_2094 at 2194.156 kb on + strand at 2194.158 kb on + strand at 2194.166 kb on - strand at 2194.435 kb on - strand at 2194.569 kb on + strand, within HP15_2095 at 2194.738 kb on - strand, within HP15_2095 at 2194.793 kb on + strand, within HP15_2095 at 2194.920 kb on + strand, within HP15_2095 at 2194.971 kb on + strand, within HP15_2095 at 2195.018 kb on + strand, within HP15_2095 at 2195.088 kb on - strand, within HP15_2095 at 2195.122 kb on - strand, within HP15_2095 at 2195.392 kb on + strand, within HP15_2095 at 2195.728 kb on - strand, within HP15_2096 at 2195.728 kb on - strand, within HP15_2096 at 2195.821 kb on + strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.829 kb on - strand, within HP15_2096 at 2195.934 kb on + strand, within HP15_2096 at 2195.955 kb on + strand, within HP15_2096 at 2196.109 kb on + strand at 2196.211 kb on + strand at 2196.264 kb on - strand, within HP15_2097
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,193,387 - +2.1 2,193,621 + -0.1 2,193,722 - HP15_2094 0.17 -0.7 2,193,755 + HP15_2094 0.23 +0.6 2,193,866 + HP15_2094 0.42 +0.1 2,193,879 - HP15_2094 0.44 +0.8 2,193,934 - HP15_2094 0.53 -0.2 2,194,058 - HP15_2094 0.74 +0.5 2,194,156 + +0.5 2,194,158 + +1.0 2,194,166 - +0.5 2,194,435 - -2.5 2,194,569 + HP15_2095 0.17 -3.3 2,194,738 - HP15_2095 0.31 -6.5 2,194,793 + HP15_2095 0.35 -3.2 2,194,920 + HP15_2095 0.46 +0.5 2,194,971 + HP15_2095 0.50 -3.0 2,195,018 + HP15_2095 0.54 -7.1 2,195,088 - HP15_2095 0.59 -4.7 2,195,122 - HP15_2095 0.62 -5.9 2,195,392 + HP15_2095 0.84 -3.4 2,195,728 - HP15_2096 0.29 +0.1 2,195,728 - HP15_2096 0.29 -1.3 2,195,821 + HP15_2096 0.48 +0.9 2,195,829 - HP15_2096 0.50 +0.7 2,195,829 - HP15_2096 0.50 -0.9 2,195,934 + HP15_2096 0.72 +1.2 2,195,955 + HP15_2096 0.77 +0.8 2,196,109 + +0.7 2,196,211 + +0.2 2,196,264 - HP15_2097 0.12 -0.8
Or see this region's nucleotide sequence