Strain Fitness in Marinobacter adhaerens HP15 around HP15_2095

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2093 and HP15_2094 are separated by 9 nucleotidesHP15_2094 and HP15_2095 are separated by 159 nucleotidesHP15_2095 and HP15_2096 are separated by 11 nucleotidesHP15_2096 and HP15_2097 are separated by 95 nucleotides HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613 _2093 HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207 _2094 HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581 _2095 HP15_2096: HP15_2096 - conserved hypothetical protein, at 2,195,593 to 2,196,063 _2096 HP15_2097: HP15_2097 - protease HtpX-like protein, at 2,196,159 to 2,197,040 _2097 Position (kb) 2194 2195 2196Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 2193.387 kb on - strandat 2193.621 kb on + strandat 2193.722 kb on - strand, within HP15_2094at 2193.755 kb on + strand, within HP15_2094at 2193.866 kb on + strand, within HP15_2094at 2193.879 kb on - strand, within HP15_2094at 2193.934 kb on - strand, within HP15_2094at 2194.058 kb on - strand, within HP15_2094at 2194.156 kb on + strandat 2194.158 kb on + strandat 2194.166 kb on - strandat 2194.435 kb on - strandat 2194.569 kb on + strand, within HP15_2095at 2194.738 kb on - strand, within HP15_2095at 2194.793 kb on + strand, within HP15_2095at 2194.920 kb on + strand, within HP15_2095at 2194.971 kb on + strand, within HP15_2095at 2195.018 kb on + strand, within HP15_2095at 2195.088 kb on - strand, within HP15_2095at 2195.122 kb on - strand, within HP15_2095at 2195.392 kb on + strand, within HP15_2095at 2195.728 kb on - strand, within HP15_2096at 2195.728 kb on - strand, within HP15_2096at 2195.821 kb on + strand, within HP15_2096at 2195.829 kb on - strand, within HP15_2096at 2195.829 kb on - strand, within HP15_2096at 2195.934 kb on + strand, within HP15_2096at 2195.955 kb on + strand, within HP15_2096at 2196.109 kb on + strandat 2196.211 kb on + strandat 2196.264 kb on - strand, within HP15_2097

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,193,387 - +2.1
2,193,621 + -0.1
2,193,722 - HP15_2094 0.17 -0.7
2,193,755 + HP15_2094 0.23 +0.6
2,193,866 + HP15_2094 0.42 +0.1
2,193,879 - HP15_2094 0.44 +0.8
2,193,934 - HP15_2094 0.53 -0.2
2,194,058 - HP15_2094 0.74 +0.5
2,194,156 + +0.5
2,194,158 + +1.0
2,194,166 - +0.5
2,194,435 - -2.5
2,194,569 + HP15_2095 0.17 -3.3
2,194,738 - HP15_2095 0.31 -6.5
2,194,793 + HP15_2095 0.35 -3.2
2,194,920 + HP15_2095 0.46 +0.5
2,194,971 + HP15_2095 0.50 -3.0
2,195,018 + HP15_2095 0.54 -7.1
2,195,088 - HP15_2095 0.59 -4.7
2,195,122 - HP15_2095 0.62 -5.9
2,195,392 + HP15_2095 0.84 -3.4
2,195,728 - HP15_2096 0.29 +0.1
2,195,728 - HP15_2096 0.29 -1.3
2,195,821 + HP15_2096 0.48 +0.9
2,195,829 - HP15_2096 0.50 +0.7
2,195,829 - HP15_2096 0.50 -0.9
2,195,934 + HP15_2096 0.72 +1.2
2,195,955 + HP15_2096 0.77 +0.8
2,196,109 + +0.7
2,196,211 + +0.2
2,196,264 - HP15_2097 0.12 -0.8

Or see this region's nucleotide sequence