Strain Fitness in Marinobacter adhaerens HP15 around HP15_2073

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2071 and HP15_2072 are separated by 95 nucleotidesHP15_2072 and HP15_2073 are separated by 152 nucleotidesHP15_2073 and HP15_2074 overlap by 1 nucleotidesHP15_2074 and HP15_2075 are separated by 7 nucleotides HP15_2071: HP15_2071 - conserved hypothetical protein, at 2,172,114 to 2,172,701 _2071 HP15_2072: HP15_2072 - conserved hypothetical protein, secreted, at 2,172,797 to 2,173,099 _2072 HP15_2073: HP15_2073 - peptidyl-arginine deiminase family protein, at 2,173,252 to 2,174,250 _2073 HP15_2074: HP15_2074 - carbon-nitrogen hydrolase family protein, at 2,174,250 to 2,175,173 _2074 HP15_2075: HP15_2075 - MoxR protein, at 2,175,181 to 2,176,092 _2075 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -3 -2 -1 0 1at 2172.364 kb on - strand, within HP15_2071at 2172.364 kb on - strand, within HP15_2071at 2172.403 kb on - strand, within HP15_2071at 2172.442 kb on + strand, within HP15_2071at 2172.450 kb on - strand, within HP15_2071at 2172.460 kb on - strand, within HP15_2071at 2172.484 kb on + strand, within HP15_2071at 2172.598 kb on + strand, within HP15_2071at 2172.598 kb on + strand, within HP15_2071at 2172.703 kb on - strandat 2172.820 kb on - strandat 2172.829 kb on + strand, within HP15_2072at 2172.944 kb on - strand, within HP15_2072at 2173.036 kb on + strand, within HP15_2072at 2173.129 kb on - strandat 2173.228 kb on + strandat 2173.257 kb on + strandat 2173.649 kb on - strand, within HP15_2073at 2173.879 kb on - strand, within HP15_2073at 2173.917 kb on + strand, within HP15_2073at 2173.959 kb on - strand, within HP15_2073at 2173.996 kb on + strand, within HP15_2073at 2174.004 kb on - strand, within HP15_2073at 2174.009 kb on - strand, within HP15_2073at 2174.029 kb on - strand, within HP15_2073at 2174.102 kb on + strand, within HP15_2073at 2174.414 kb on - strand, within HP15_2074at 2174.450 kb on + strand, within HP15_2074at 2174.503 kb on - strand, within HP15_2074at 2174.527 kb on - strand, within HP15_2074at 2174.739 kb on + strand, within HP15_2074at 2174.754 kb on - strand, within HP15_2074at 2174.895 kb on + strand, within HP15_2074at 2174.928 kb on + strand, within HP15_2074

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,172,364 - HP15_2071 0.43 -1.2
2,172,364 - HP15_2071 0.43 +0.3
2,172,403 - HP15_2071 0.49 -2.9
2,172,442 + HP15_2071 0.56 +0.3
2,172,450 - HP15_2071 0.57 +0.1
2,172,460 - HP15_2071 0.59 -0.1
2,172,484 + HP15_2071 0.63 -0.9
2,172,598 + HP15_2071 0.82 +0.8
2,172,598 + HP15_2071 0.82 +0.9
2,172,703 - +0.4
2,172,820 - +0.1
2,172,829 + HP15_2072 0.11 +0.5
2,172,944 - HP15_2072 0.49 +0.9
2,173,036 + HP15_2072 0.79 -0.0
2,173,129 - -0.3
2,173,228 + +0.2
2,173,257 + +1.0
2,173,649 - HP15_2073 0.40 -0.1
2,173,879 - HP15_2073 0.63 +1.2
2,173,917 + HP15_2073 0.67 +0.3
2,173,959 - HP15_2073 0.71 +1.0
2,173,996 + HP15_2073 0.74 +0.9
2,174,004 - HP15_2073 0.75 +0.4
2,174,009 - HP15_2073 0.76 +0.3
2,174,029 - HP15_2073 0.78 -0.1
2,174,102 + HP15_2073 0.85 +0.9
2,174,414 - HP15_2074 0.18 +1.5
2,174,450 + HP15_2074 0.22 +0.5
2,174,503 - HP15_2074 0.27 -0.7
2,174,527 - HP15_2074 0.30 -0.5
2,174,739 + HP15_2074 0.53 +1.1
2,174,754 - HP15_2074 0.55 -2.0
2,174,895 + HP15_2074 0.70 +0.9
2,174,928 + HP15_2074 0.73 -0.5

Or see this region's nucleotide sequence