Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2071 and HP15_2072 are separated by 95 nucleotides HP15_2072 and HP15_2073 are separated by 152 nucleotides HP15_2073 and HP15_2074 overlap by 1 nucleotides HP15_2074 and HP15_2075 are separated by 7 nucleotides
HP15_2071: HP15_2071 - conserved hypothetical protein, at 2,172,114 to 2,172,701
_2071
HP15_2072: HP15_2072 - conserved hypothetical protein, secreted, at 2,172,797 to 2,173,099
_2072
HP15_2073: HP15_2073 - peptidyl-arginine deiminase family protein, at 2,173,252 to 2,174,250
_2073
HP15_2074: HP15_2074 - carbon-nitrogen hydrolase family protein, at 2,174,250 to 2,175,173
_2074
HP15_2075: HP15_2075 - MoxR protein, at 2,175,181 to 2,176,092
_2075
Position (kb)
2173
2174
2175 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2172.364 kb on - strand, within HP15_2071 at 2172.364 kb on - strand, within HP15_2071 at 2172.403 kb on - strand, within HP15_2071 at 2172.442 kb on + strand, within HP15_2071 at 2172.450 kb on - strand, within HP15_2071 at 2172.460 kb on - strand, within HP15_2071 at 2172.484 kb on + strand, within HP15_2071 at 2172.598 kb on + strand, within HP15_2071 at 2172.598 kb on + strand, within HP15_2071 at 2172.703 kb on - strand at 2172.820 kb on - strand at 2172.829 kb on + strand, within HP15_2072 at 2172.944 kb on - strand, within HP15_2072 at 2173.036 kb on + strand, within HP15_2072 at 2173.129 kb on - strand at 2173.228 kb on + strand at 2173.257 kb on + strand at 2173.649 kb on - strand, within HP15_2073 at 2173.879 kb on - strand, within HP15_2073 at 2173.917 kb on + strand, within HP15_2073 at 2173.959 kb on - strand, within HP15_2073 at 2173.996 kb on + strand, within HP15_2073 at 2174.004 kb on - strand, within HP15_2073 at 2174.009 kb on - strand, within HP15_2073 at 2174.029 kb on - strand, within HP15_2073 at 2174.102 kb on + strand, within HP15_2073 at 2174.414 kb on - strand, within HP15_2074 at 2174.450 kb on + strand, within HP15_2074 at 2174.503 kb on - strand, within HP15_2074 at 2174.527 kb on - strand, within HP15_2074 at 2174.739 kb on + strand, within HP15_2074 at 2174.754 kb on - strand, within HP15_2074 at 2174.895 kb on + strand, within HP15_2074 at 2174.928 kb on + strand, within HP15_2074
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,172,364 - HP15_2071 0.43 -1.2 2,172,364 - HP15_2071 0.43 +0.3 2,172,403 - HP15_2071 0.49 -2.9 2,172,442 + HP15_2071 0.56 +0.3 2,172,450 - HP15_2071 0.57 +0.1 2,172,460 - HP15_2071 0.59 -0.1 2,172,484 + HP15_2071 0.63 -0.9 2,172,598 + HP15_2071 0.82 +0.8 2,172,598 + HP15_2071 0.82 +0.9 2,172,703 - +0.4 2,172,820 - +0.1 2,172,829 + HP15_2072 0.11 +0.5 2,172,944 - HP15_2072 0.49 +0.9 2,173,036 + HP15_2072 0.79 -0.0 2,173,129 - -0.3 2,173,228 + +0.2 2,173,257 + +1.0 2,173,649 - HP15_2073 0.40 -0.1 2,173,879 - HP15_2073 0.63 +1.2 2,173,917 + HP15_2073 0.67 +0.3 2,173,959 - HP15_2073 0.71 +1.0 2,173,996 + HP15_2073 0.74 +0.9 2,174,004 - HP15_2073 0.75 +0.4 2,174,009 - HP15_2073 0.76 +0.3 2,174,029 - HP15_2073 0.78 -0.1 2,174,102 + HP15_2073 0.85 +0.9 2,174,414 - HP15_2074 0.18 +1.5 2,174,450 + HP15_2074 0.22 +0.5 2,174,503 - HP15_2074 0.27 -0.7 2,174,527 - HP15_2074 0.30 -0.5 2,174,739 + HP15_2074 0.53 +1.1 2,174,754 - HP15_2074 0.55 -2.0 2,174,895 + HP15_2074 0.70 +0.9 2,174,928 + HP15_2074 0.73 -0.5
Or see this region's nucleotide sequence