Strain Fitness in Marinobacter adhaerens HP15 around HP15_2039

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2037 and HP15_2038 are separated by 46 nucleotidesHP15_2038 and HP15_2039 are separated by 3 nucleotidesHP15_2039 and HP15_2040 overlap by 8 nucleotides HP15_2037: HP15_2037 - biopolymer transport, TolR, at 2,137,569 to 2,138,015 _2037 HP15_2038: HP15_2038 - MotA/TolQ/ExbB proton channel, at 2,138,062 to 2,138,751 _2038 HP15_2039: HP15_2039 - 4-hydroxybenzoyl-CoA thioesterase, at 2,138,755 to 2,139,216 _2039 HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252 _2040 Position (kb) 2138 2139 2140Strain fitness (log2 ratio) -2 -1 0 1at 2138.068 kb on - strandat 2138.796 kb on - strandat 2138.833 kb on + strand, within HP15_2039at 2138.904 kb on + strand, within HP15_2039at 2138.935 kb on + strand, within HP15_2039at 2138.971 kb on + strand, within HP15_2039at 2139.030 kb on + strand, within HP15_2039at 2139.149 kb on + strand, within HP15_2039

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,138,068 - -0.5
2,138,796 - +1.0
2,138,833 + HP15_2039 0.17 -0.3
2,138,904 + HP15_2039 0.32 -0.5
2,138,935 + HP15_2039 0.39 -2.0
2,138,971 + HP15_2039 0.47 -1.4
2,139,030 + HP15_2039 0.60 -2.4
2,139,149 + HP15_2039 0.85 -1.4

Or see this region's nucleotide sequence