Strain Fitness in Marinobacter adhaerens HP15 around HP15_2026

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2024 and HP15_2025 are separated by 32 nucleotidesHP15_2025 and HP15_2026 are separated by 44 nucleotidesHP15_2026 and HP15_2027 are separated by 68 nucleotides HP15_2024: HP15_2024 - conserved hypothetical protein, secreted, at 2,125,169 to 2,125,906 _2024 HP15_2025: HP15_2025 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,125,939 to 2,126,652 _2025 HP15_2026: HP15_2026 - lipoprotein, at 2,126,697 to 2,127,761 _2026 HP15_2027: HP15_2027 - dihydrodipicolinate synthase, at 2,127,830 to 2,128,708 _2027 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2125.704 kb on + strand, within HP15_2024at 2125.843 kb on - strandat 2126.809 kb on - strand, within HP15_2026at 2126.809 kb on - strand, within HP15_2026at 2127.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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2,125,704 + HP15_2024 0.72 -0.2
2,125,843 - -0.2
2,126,809 - HP15_2026 0.11 -4.1
2,126,809 - HP15_2026 0.11 -0.3
2,127,825 - +0.4

Or see this region's nucleotide sequence