Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1935 and HP15_1936 are separated by 16 nucleotides HP15_1936 and HP15_1937 are separated by 135 nucleotides
HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914
_1935
HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173
_1936
HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181
_1937
HP15_1938: HP15_1938 - conserved hypothetical protein, membrane, at 2,057,165 to 2,058,088
_1938
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-1
0
1 at 2056.089 kb on - strand, within HP15_1936 at 2056.275 kb on + strand at 2056.299 kb on - strand at 2056.321 kb on + strand at 2056.321 kb on + strand at 2056.728 kb on - strand, within HP15_1937 at 2056.730 kb on - strand, within HP15_1937 at 2056.772 kb on + strand, within HP15_1937 at 2056.779 kb on + strand, within HP15_1937 at 2056.851 kb on + strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.933 kb on - strand, within HP15_1937 at 2057.029 kb on - strand, within HP15_1937 at 2057.066 kb on - strand, within HP15_1937 at 2057.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 2,056,089 - HP15_1936 0.65 +0.7 2,056,275 + -0.7 2,056,299 - +0.2 2,056,321 + -0.1 2,056,321 + +1.2 2,056,728 - HP15_1937 0.48 -0.6 2,056,730 - HP15_1937 0.48 +0.1 2,056,772 + HP15_1937 0.53 +0.1 2,056,779 + HP15_1937 0.54 +0.2 2,056,851 + HP15_1937 0.62 -0.4 2,056,864 - HP15_1937 0.64 -0.4 2,056,864 - HP15_1937 0.64 -0.1 2,056,864 - HP15_1937 0.64 +0.2 2,056,933 - HP15_1937 0.71 +0.1 2,057,029 - HP15_1937 0.82 +0.1 2,057,066 - HP15_1937 0.87 +0.3 2,057,151 - -0.8
Or see this region's nucleotide sequence