Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1827 and HP15_1828 overlap by 20 nucleotides HP15_1828 and HP15_1829 overlap by 4 nucleotides HP15_1829 and HP15_1830 are separated by 107 nucleotides
HP15_1827: HP15_1827 - tryptophan synthase, beta subunit, at 1,923,987 to 1,925,207
_1827
HP15_1828: HP15_1828 - phosphoribosylanthranilate isomerase, at 1,925,188 to 1,925,817
_1828
HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722
_1829
HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078
_1830
Position (kb) 1925
1926
1927 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1925.326 kb on - strand, within HP15_1828 at 1925.350 kb on - strand, within HP15_1828 at 1925.488 kb on - strand, within HP15_1828 at 1925.760 kb on - strand at 1925.929 kb on - strand, within HP15_1829 at 1926.345 kb on - strand, within HP15_1829 at 1926.435 kb on + strand, within HP15_1829 at 1926.537 kb on + strand, within HP15_1829 at 1926.563 kb on - strand, within HP15_1829 at 1926.850 kb on + strand at 1926.857 kb on + strand at 1926.864 kb on + strand at 1926.918 kb on + strand at 1927.182 kb on + strand, within HP15_1830 at 1927.215 kb on - strand, within HP15_1830 at 1927.242 kb on + strand, within HP15_1830 at 1927.333 kb on + strand, within HP15_1830 at 1927.341 kb on - strand, within HP15_1830 at 1927.483 kb on + strand, within HP15_1830
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 1,925,326 - HP15_1828 0.22 -2.2 1,925,350 - HP15_1828 0.26 -3.0 1,925,488 - HP15_1828 0.48 -4.4 1,925,760 - -4.1 1,925,929 - HP15_1829 0.13 +0.1 1,926,345 - HP15_1829 0.58 +0.0 1,926,435 + HP15_1829 0.68 +1.3 1,926,537 + HP15_1829 0.80 +0.6 1,926,563 - HP15_1829 0.82 -1.2 1,926,850 + -1.0 1,926,857 + -0.3 1,926,864 + -0.2 1,926,918 + +0.0 1,927,182 + HP15_1830 0.11 +0.0 1,927,215 - HP15_1830 0.12 +0.1 1,927,242 + HP15_1830 0.13 +0.2 1,927,333 + HP15_1830 0.15 -0.3 1,927,341 - HP15_1830 0.16 +0.2 1,927,483 + HP15_1830 0.20 -0.4
Or see this region's nucleotide sequence