Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1792 and HP15_1793 are separated by 33 nucleotides HP15_1793 and HP15_1794 are separated by 1 nucleotides HP15_1794 and HP15_1795 are separated by 284 nucleotides
HP15_1792: HP15_1792 - B12-dependent methionine synthase, at 1,883,167 to 1,886,865
_1792
HP15_1793: HP15_1793 - conserved hypothetical protein, at 1,886,899 to 1,887,135
_1793
HP15_1794: HP15_1794 - secreted protein, at 1,887,137 to 1,887,241
_1794
HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148
_1795
Position (kb) 1886
1887
1888 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1885.940 kb on - strand, within HP15_1792 at 1886.185 kb on + strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.241 kb on + strand, within HP15_1792 at 1886.253 kb on + strand, within HP15_1792 at 1886.300 kb on - strand, within HP15_1792 at 1886.516 kb on - strand at 1886.891 kb on - strand at 1887.072 kb on + strand, within HP15_1793 at 1887.158 kb on - strand, within HP15_1794 at 1887.244 kb on + strand at 1887.304 kb on + strand at 1887.353 kb on + strand at 1887.426 kb on + strand at 1887.649 kb on - strand at 1888.010 kb on + strand, within HP15_1795 at 1888.018 kb on - strand, within HP15_1795
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 1,885,940 - HP15_1792 0.75 -0.1 1,886,185 + HP15_1792 0.82 +0.0 1,886,229 - HP15_1792 0.83 +0.5 1,886,229 - HP15_1792 0.83 +1.4 1,886,229 - HP15_1792 0.83 -0.9 1,886,241 + HP15_1792 0.83 +0.7 1,886,253 + HP15_1792 0.83 -1.0 1,886,300 - HP15_1792 0.85 -0.7 1,886,516 - -2.4 1,886,891 - -0.4 1,887,072 + HP15_1793 0.73 +0.4 1,887,158 - HP15_1794 0.20 +0.0 1,887,244 + +0.0 1,887,304 + +0.6 1,887,353 + -0.4 1,887,426 + -2.5 1,887,649 - -5.0 1,888,010 + HP15_1795 0.30 -3.2 1,888,018 - HP15_1795 0.30 -2.1
Or see this region's nucleotide sequence