Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1723 and HP15_1724 are separated by 172 nucleotides HP15_1724 and HP15_1725 are separated by 40 nucleotides HP15_1725 and HP15_1726 overlap by 1 nucleotides
HP15_1723: HP15_1723 - hydrolase, carbon-nitrogen family protein, at 1,822,063 to 1,823,583
_1723
HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154
_1724
HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863
_1725
HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139
_1726
Position (kb)
1824
1825 Strain fitness (log2 ratio)
-2
-1
0
1 at 1823.296 kb on + strand, within HP15_1723 at 1823.304 kb on - strand, within HP15_1723 at 1823.411 kb on - strand, within HP15_1723 at 1823.510 kb on - strand at 1824.037 kb on + strand, within HP15_1724 at 1824.435 kb on + strand, within HP15_1725 at 1824.491 kb on + strand, within HP15_1725 at 1824.547 kb on - strand, within HP15_1725 at 1824.596 kb on + strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.797 kb on + strand at 1824.870 kb on - strand at 1824.902 kb on - strand at 1825.250 kb on + strand, within HP15_1726 at 1825.250 kb on + strand, within HP15_1726 at 1825.287 kb on + strand, within HP15_1726 at 1825.375 kb on - strand, within HP15_1726 at 1825.412 kb on - strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.485 kb on + strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.493 kb on - strand, within HP15_1726 at 1825.582 kb on - strand, within HP15_1726 at 1825.604 kb on - strand, within HP15_1726 at 1825.626 kb on + strand, within HP15_1726 at 1825.629 kb on - strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.690 kb on + strand, within HP15_1726 at 1825.807 kb on + strand, within HP15_1726
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 1,823,296 + HP15_1723 0.81 -0.7 1,823,304 - HP15_1723 0.82 -0.2 1,823,411 - HP15_1723 0.89 -1.1 1,823,510 - +0.0 1,824,037 + HP15_1724 0.70 -1.8 1,824,435 + HP15_1725 0.36 +0.0 1,824,491 + HP15_1725 0.44 +0.9 1,824,547 - HP15_1725 0.53 +0.5 1,824,596 + HP15_1725 0.60 +0.2 1,824,706 - HP15_1725 0.76 +1.1 1,824,706 - HP15_1725 0.76 +0.2 1,824,797 + +0.1 1,824,870 - +0.1 1,824,902 - +0.3 1,825,250 + HP15_1726 0.17 -0.7 1,825,250 + HP15_1726 0.17 +0.3 1,825,287 + HP15_1726 0.19 -0.4 1,825,375 - HP15_1726 0.22 -0.3 1,825,412 - HP15_1726 0.24 -0.3 1,825,485 + HP15_1726 0.27 -2.7 1,825,485 + HP15_1726 0.27 +0.4 1,825,493 - HP15_1726 0.28 -0.3 1,825,493 - HP15_1726 0.28 +0.6 1,825,582 - HP15_1726 0.32 +0.6 1,825,604 - HP15_1726 0.33 -0.4 1,825,626 + HP15_1726 0.34 -0.1 1,825,629 - HP15_1726 0.34 +0.8 1,825,690 + HP15_1726 0.36 +0.2 1,825,690 + HP15_1726 0.36 +0.4 1,825,807 + HP15_1726 0.41 +0.0
Or see this region's nucleotide sequence