Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1706 and HP15_1707 are separated by 30 nucleotides HP15_1707 and HP15_1708 are separated by 27 nucleotides HP15_1708 and HP15_1709 are separated by 163 nucleotides
HP15_1706: HP15_1706 - alpha-glucan phosphorylase, at 1,799,886 to 1,802,420
_1706
HP15_1707: HP15_1707 - short-chain dehydrogenase/reductase SDR, at 1,802,451 to 1,803,221
_1707
HP15_1708: HP15_1708 - type IV pilus assembly PilZ, at 1,803,249 to 1,803,545
_1708
HP15_1709: HP15_1709 - 4-alpha-glucanotransferase, at 1,803,709 to 1,805,202
_1709
Position (kb)
1802
1803
1804 Strain fitness (log2 ratio)
-1
0
1 at 1801.521 kb on + strand, within HP15_1706 at 1801.563 kb on + strand, within HP15_1706 at 1801.591 kb on + strand, within HP15_1706 at 1801.594 kb on + strand, within HP15_1706 at 1801.731 kb on - strand, within HP15_1706 at 1801.837 kb on + strand, within HP15_1706 at 1802.001 kb on + strand, within HP15_1706 at 1802.061 kb on - strand, within HP15_1706 at 1802.081 kb on + strand, within HP15_1706 at 1802.118 kb on - strand, within HP15_1706 at 1802.199 kb on - strand at 1802.199 kb on - strand at 1802.269 kb on - strand at 1802.407 kb on - strand at 1802.415 kb on + strand at 1802.440 kb on - strand at 1802.461 kb on + strand at 1802.491 kb on - strand at 1802.698 kb on + strand, within HP15_1707 at 1803.213 kb on - strand at 1803.227 kb on + strand at 1803.235 kb on + strand at 1803.243 kb on - strand at 1803.397 kb on + strand, within HP15_1708 at 1803.399 kb on - strand, within HP15_1708 at 1803.503 kb on - strand, within HP15_1708 at 1803.844 kb on + strand at 1804.000 kb on + strand, within HP15_1709 at 1804.007 kb on + strand, within HP15_1709 at 1804.056 kb on - strand, within HP15_1709 at 1804.109 kb on + strand, within HP15_1709 at 1804.207 kb on + strand, within HP15_1709
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 1,801,521 + HP15_1706 0.64 -0.3 1,801,563 + HP15_1706 0.66 -0.2 1,801,591 + HP15_1706 0.67 -0.3 1,801,594 + HP15_1706 0.67 -0.9 1,801,731 - HP15_1706 0.73 -0.5 1,801,837 + HP15_1706 0.77 -0.0 1,802,001 + HP15_1706 0.83 -0.6 1,802,061 - HP15_1706 0.86 -0.7 1,802,081 + HP15_1706 0.87 +0.8 1,802,118 - HP15_1706 0.88 +0.5 1,802,199 - +1.6 1,802,199 - +1.4 1,802,269 - +0.3 1,802,407 - -0.4 1,802,415 + +0.1 1,802,440 - -0.3 1,802,461 + -0.3 1,802,491 - +0.3 1,802,698 + HP15_1707 0.32 +1.1 1,803,213 - -1.3 1,803,227 + -1.0 1,803,235 + -0.3 1,803,243 - -0.3 1,803,397 + HP15_1708 0.50 +0.3 1,803,399 - HP15_1708 0.51 -0.1 1,803,503 - HP15_1708 0.86 -0.1 1,803,844 + -0.9 1,804,000 + HP15_1709 0.19 +0.1 1,804,007 + HP15_1709 0.20 +0.7 1,804,056 - HP15_1709 0.23 -0.7 1,804,109 + HP15_1709 0.27 -0.2 1,804,207 + HP15_1709 0.33 -0.5
Or see this region's nucleotide sequence