Strain Fitness in Marinobacter adhaerens HP15 around HP15_1655

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1653 and HP15_1654 are separated by 46 nucleotidesHP15_1654 and HP15_1655 are separated by 225 nucleotidesHP15_1655 and HP15_1656 are separated by 26 nucleotidesHP15_1656 and HP15_1657 overlap by 14 nucleotides HP15_1653: HP15_1653 - protein containing DUF1348, at 1,749,613 to 1,750,083 _1653 HP15_1654: HP15_1654 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 1,750,130 to 1,750,690 _1654 HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485 _1655 HP15_1656: HP15_1656 - dihydrolipoamide dehydrogenase-like protein, at 1,751,512 to 1,751,757 _1656 HP15_1657: HP15_1657 - dihydrolipoamide dehydrogenase, at 1,751,744 to 1,753,165 _1657 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.973 kb on - strand, within HP15_1653at 1749.990 kb on + strand, within HP15_1653at 1750.087 kb on - strandat 1750.087 kb on - strandat 1750.123 kb on + strandat 1750.131 kb on - strandat 1750.133 kb on + strandat 1750.171 kb on - strandat 1750.204 kb on + strand, within HP15_1654at 1750.204 kb on - strand, within HP15_1654at 1750.221 kb on - strand, within HP15_1654at 1750.356 kb on - strand, within HP15_1654at 1750.383 kb on - strand, within HP15_1654at 1750.598 kb on - strand, within HP15_1654at 1750.635 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.810 kb on - strandat 1750.891 kb on - strandat 1751.058 kb on + strand, within HP15_1655at 1751.351 kb on - strand, within HP15_1655at 1751.438 kb on + strandat 1751.541 kb on + strand, within HP15_1656at 1751.582 kb on - strand, within HP15_1656at 1751.614 kb on + strand, within HP15_1656at 1751.673 kb on - strand, within HP15_1656at 1751.867 kb on - strandat 1751.872 kb on + strandat 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.898 kb on + strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.906 kb on - strand, within HP15_1657at 1751.963 kb on + strand, within HP15_1657at 1751.963 kb on + strand, within HP15_1657at 1751.971 kb on - strand, within HP15_1657at 1751.987 kb on - strand, within HP15_1657at 1752.130 kb on - strand, within HP15_1657at 1752.266 kb on + strand, within HP15_1657at 1752.274 kb on - strand, within HP15_1657at 1752.376 kb on + strand, within HP15_1657at 1752.430 kb on + strand, within HP15_1657

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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1,749,973 - HP15_1653 0.76 -0.0
1,749,990 + HP15_1653 0.80 +0.2
1,750,087 - -1.7
1,750,087 - -0.1
1,750,123 + -0.4
1,750,131 - +0.3
1,750,133 + +0.6
1,750,171 - +0.7
1,750,204 + HP15_1654 0.13 -0.1
1,750,204 - HP15_1654 0.13 +0.5
1,750,221 - HP15_1654 0.16 +1.0
1,750,356 - HP15_1654 0.40 -1.6
1,750,383 - HP15_1654 0.45 -0.9
1,750,598 - HP15_1654 0.83 +0.5
1,750,635 + -0.1
1,750,802 + +0.6
1,750,802 + -1.5
1,750,802 + -0.2
1,750,802 + -1.1
1,750,810 - +1.6
1,750,891 - +0.2
1,751,058 + HP15_1655 0.25 -2.0
1,751,351 - HP15_1655 0.76 +0.1
1,751,438 + -1.5
1,751,541 + HP15_1656 0.12 -0.2
1,751,582 - HP15_1656 0.28 +0.8
1,751,614 + HP15_1656 0.41 -1.1
1,751,673 - HP15_1656 0.65 +0.0
1,751,867 - -0.2
1,751,872 + +0.3
1,751,892 + HP15_1657 0.10 -0.7
1,751,892 + HP15_1657 0.10 -0.4
1,751,892 + HP15_1657 0.10 -0.4
1,751,892 + HP15_1657 0.10 -2.1
1,751,892 + HP15_1657 0.10 +0.0
1,751,892 + HP15_1657 0.10 +0.1
1,751,898 + HP15_1657 0.11 +0.3
1,751,900 - HP15_1657 0.11 +0.1
1,751,900 - HP15_1657 0.11 +1.9
1,751,900 - HP15_1657 0.11 -0.3
1,751,906 - HP15_1657 0.11 -0.6
1,751,963 + HP15_1657 0.15 -0.3
1,751,963 + HP15_1657 0.15 -1.5
1,751,971 - HP15_1657 0.16 -0.2
1,751,987 - HP15_1657 0.17 +0.6
1,752,130 - HP15_1657 0.27 -1.1
1,752,266 + HP15_1657 0.37 +0.4
1,752,274 - HP15_1657 0.37 -0.2
1,752,376 + HP15_1657 0.44 -0.7
1,752,430 + HP15_1657 0.48 +0.2

Or see this region's nucleotide sequence