Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_155 and HP15_156 are separated by 49 nucleotides HP15_156 and HP15_157 are separated by 389 nucleotides HP15_157 and HP15_158 are separated by 186 nucleotides HP15_158 and HP15_159 are separated by 60 nucleotides
HP15_155: HP15_155 - conserved hypothetical protein, membrane, at 154,953 to 155,630
_155
HP15_156: HP15_156 - conserved hypothetical protein, at 155,680 to 155,997
_156
HP15_157: HP15_157 - conserved hypothetical protein, at 156,387 to 156,779
_157
HP15_158: HP15_158 - protein MerR-like protein, at 156,966 to 157,226
_158
HP15_159: HP15_159 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 157,287 to 158,009
_159
Position (kb) 156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.519 kb on + strand, within HP15_155 at 155.519 kb on + strand, within HP15_155 at 155.519 kb on + strand, within HP15_155 at 155.534 kb on - strand, within HP15_155 at 155.538 kb on + strand, within HP15_155 at 155.546 kb on - strand, within HP15_155 at 155.546 kb on - strand, within HP15_155 at 155.571 kb on + strand at 155.571 kb on + strand at 155.579 kb on - strand at 155.598 kb on - strand at 155.598 kb on - strand at 155.630 kb on + strand at 155.639 kb on + strand at 155.639 kb on + strand at 155.649 kb on - strand at 155.683 kb on - strand at 155.688 kb on + strand at 155.698 kb on + strand at 155.788 kb on + strand, within HP15_156 at 155.882 kb on + strand, within HP15_156 at 155.884 kb on - strand, within HP15_156 at 155.884 kb on - strand, within HP15_156 at 155.999 kb on - strand at 155.999 kb on - strand at 156.004 kb on - strand at 156.009 kb on - strand at 156.022 kb on - strand at 156.048 kb on + strand at 156.156 kb on + strand at 156.156 kb on + strand at 156.187 kb on + strand at 156.280 kb on + strand at 156.280 kb on + strand at 156.288 kb on - strand at 156.316 kb on - strand at 156.343 kb on - strand at 156.381 kb on + strand at 156.671 kb on + strand, within HP15_157 at 156.729 kb on - strand, within HP15_157 at 156.729 kb on - strand, within HP15_157 at 156.731 kb on + strand, within HP15_157 at 156.739 kb on - strand, within HP15_157 at 156.741 kb on + strand at 156.749 kb on - strand at 156.824 kb on + strand at 156.845 kb on - strand at 156.949 kb on - strand at 156.949 kb on - strand at 157.120 kb on - strand, within HP15_158 at 157.120 kb on - strand, within HP15_158 at 157.122 kb on + strand, within HP15_158 at 157.312 kb on + strand at 157.421 kb on + strand, within HP15_159 at 157.458 kb on + strand, within HP15_159 at 157.549 kb on - strand, within HP15_159 at 157.556 kb on - strand, within HP15_159 at 157.571 kb on + strand, within HP15_159 at 157.571 kb on + strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.627 kb on - strand, within HP15_159 at 157.644 kb on + strand, within HP15_159 at 157.704 kb on - strand, within HP15_159 at 157.713 kb on - strand, within HP15_159 at 157.760 kb on + strand, within HP15_159
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 155,519 + HP15_155 0.83 -0.7 155,519 + HP15_155 0.83 -0.2 155,519 + HP15_155 0.83 +0.1 155,534 - HP15_155 0.86 +3.7 155,538 + HP15_155 0.86 -0.4 155,546 - HP15_155 0.87 -1.1 155,546 - HP15_155 0.87 +1.0 155,571 + +0.3 155,571 + -1.8 155,579 - -0.2 155,598 - -0.6 155,598 - +0.6 155,630 + +0.9 155,639 + +0.6 155,639 + -0.0 155,649 - -0.5 155,683 - -0.6 155,688 + -0.5 155,698 + -1.0 155,788 + HP15_156 0.34 -0.2 155,882 + HP15_156 0.64 +0.5 155,884 - HP15_156 0.64 -0.8 155,884 - HP15_156 0.64 +0.1 155,999 - +0.6 155,999 - -0.5 156,004 - -0.0 156,009 - +0.3 156,022 - -0.0 156,048 + +0.9 156,156 + +1.0 156,156 + +1.8 156,187 + +0.8 156,280 + -0.5 156,280 + +0.3 156,288 - -0.1 156,316 - +1.0 156,343 - +0.5 156,381 + -1.4 156,671 + HP15_157 0.72 +0.4 156,729 - HP15_157 0.87 -0.1 156,729 - HP15_157 0.87 +0.6 156,731 + HP15_157 0.88 +0.3 156,739 - HP15_157 0.90 +1.2 156,741 + +0.2 156,749 - -0.1 156,824 + -0.9 156,845 - +0.4 156,949 - +1.0 156,949 - +0.1 157,120 - HP15_158 0.59 -0.2 157,120 - HP15_158 0.59 -0.2 157,122 + HP15_158 0.60 -0.1 157,312 + -0.2 157,421 + HP15_159 0.19 -0.1 157,458 + HP15_159 0.24 +0.4 157,549 - HP15_159 0.36 +0.1 157,556 - HP15_159 0.37 -0.8 157,571 + HP15_159 0.39 -0.2 157,571 + HP15_159 0.39 +0.2 157,627 - HP15_159 0.47 -1.2 157,627 - HP15_159 0.47 -0.1 157,644 + HP15_159 0.49 +0.2 157,704 - HP15_159 0.58 -0.1 157,713 - HP15_159 0.59 +0.9 157,760 + HP15_159 0.65 +0.8
Or see this region's nucleotide sequence