Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26435

Experiment: 6-Pentyl-2H-pyran-2-one 0.6266795 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26430 and AZOBR_RS26435 are separated by 220 nucleotidesAZOBR_RS26435 and AZOBR_RS26440 are separated by 159 nucleotides AZOBR_RS26430: AZOBR_RS26430 - ABC transporter permease, at 74,384 to 76,273 _RS26430 AZOBR_RS26435: AZOBR_RS26435 - ABC transporter substrate-binding protein, at 76,494 to 77,510 _RS26435 AZOBR_RS26440: AZOBR_RS26440 - transketolase, at 77,670 to 78,680 _RS26440 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 75.651 kb on + strand, within AZOBR_RS26430at 75.652 kb on - strand, within AZOBR_RS26430at 76.095 kb on + strandat 76.546 kb on + strandat 76.546 kb on + strandat 76.547 kb on - strandat 76.828 kb on + strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.153 kb on - strand, within AZOBR_RS26435at 77.401 kb on + strand, within AZOBR_RS26435at 77.401 kb on + strand, within AZOBR_RS26435at 77.402 kb on - strand, within AZOBR_RS26435at 77.402 kb on - strand, within AZOBR_RS26435at 77.584 kb on + strandat 77.671 kb on + strandat 77.672 kb on - strandat 77.672 kb on - strandat 77.720 kb on - strandat 78.083 kb on - strand, within AZOBR_RS26440at 78.088 kb on + strand, within AZOBR_RS26440at 78.134 kb on - strand, within AZOBR_RS26440at 78.134 kb on - strand, within AZOBR_RS26440at 78.268 kb on + strand, within AZOBR_RS26440at 78.350 kb on - strand, within AZOBR_RS26440at 78.350 kb on - strand, within AZOBR_RS26440at 78.377 kb on - strand, within AZOBR_RS26440at 78.460 kb on + strand, within AZOBR_RS26440at 78.505 kb on + strand, within AZOBR_RS26440at 78.506 kb on - strand, within AZOBR_RS26440at 78.506 kb on - strand, within AZOBR_RS26440

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.6266795 mM
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75,651 + AZOBR_RS26430 0.67 -0.8
75,652 - AZOBR_RS26430 0.67 -0.7
76,095 + +0.2
76,546 + +1.3
76,546 + -0.6
76,547 - +0.3
76,828 + AZOBR_RS26435 0.33 -0.5
77,153 - AZOBR_RS26435 0.65 -0.4
77,153 - AZOBR_RS26435 0.65 -0.5
77,153 - AZOBR_RS26435 0.65 -0.9
77,401 + AZOBR_RS26435 0.89 -0.8
77,401 + AZOBR_RS26435 0.89 -0.3
77,402 - AZOBR_RS26435 0.89 -0.5
77,402 - AZOBR_RS26435 0.89 +1.2
77,584 + +0.8
77,671 + +0.7
77,672 - +0.1
77,672 - -0.2
77,720 - -0.4
78,083 - AZOBR_RS26440 0.41 -0.1
78,088 + AZOBR_RS26440 0.41 -0.1
78,134 - AZOBR_RS26440 0.46 -0.7
78,134 - AZOBR_RS26440 0.46 -2.7
78,268 + AZOBR_RS26440 0.59 +0.1
78,350 - AZOBR_RS26440 0.67 -0.2
78,350 - AZOBR_RS26440 0.67 -1.2
78,377 - AZOBR_RS26440 0.70 -0.8
78,460 + AZOBR_RS26440 0.78 -0.7
78,505 + AZOBR_RS26440 0.83 +0.4
78,506 - AZOBR_RS26440 0.83 -0.3
78,506 - AZOBR_RS26440 0.83 +0.1

Or see this region's nucleotide sequence