Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_768 and HP15_769 are separated by 3 nucleotides HP15_769 and HP15_770 are separated by 158 nucleotides HP15_770 and HP15_771 are separated by 110 nucleotides
HP15_768: HP15_768 - lysyl-tRNA synthetase, at 778,716 to 780,251
_768
HP15_769: HP15_769 - uracil-DNA glycosylase, at 780,255 to 780,989
_769
HP15_770: HP15_770 - signal transduction protein, at 781,148 to 781,981
_770
HP15_771: HP15_771 - glycine cleavage T-protein (aminomethyl transferase), at 782,092 to 783,087
_771
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.284 kb on + strand at 780.292 kb on - strand at 780.390 kb on + strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.398 kb on - strand, within HP15_769 at 780.413 kb on - strand, within HP15_769 at 780.423 kb on - strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.438 kb on + strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.446 kb on - strand, within HP15_769 at 780.482 kb on - strand, within HP15_769 at 780.487 kb on + strand, within HP15_769 at 780.617 kb on + strand, within HP15_769 at 780.622 kb on + strand, within HP15_769 at 780.630 kb on - strand, within HP15_769 at 780.635 kb on - strand, within HP15_769 at 780.682 kb on + strand, within HP15_769 at 780.692 kb on + strand, within HP15_769 at 780.762 kb on - strand, within HP15_769 at 780.819 kb on + strand, within HP15_769 at 780.819 kb on - strand, within HP15_769 at 780.896 kb on + strand, within HP15_769 at 780.915 kb on - strand, within HP15_769 at 780.998 kb on - strand at 781.007 kb on + strand at 781.519 kb on - strand, within HP15_770 at 781.572 kb on + strand, within HP15_770 at 781.622 kb on + strand, within HP15_770 at 781.673 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.709 kb on + strand, within HP15_770 at 781.717 kb on - strand, within HP15_770 at 781.724 kb on - strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.878 kb on + strand, within HP15_770 at 781.985 kb on + strand at 781.987 kb on + strand at 781.987 kb on + strand at 781.990 kb on - strand at 781.990 kb on - strand at 782.132 kb on + strand at 782.431 kb on + strand, within HP15_771 at 782.567 kb on - strand, within HP15_771 at 782.651 kb on + strand, within HP15_771 at 782.868 kb on - strand, within HP15_771
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 780,284 + +0.2 780,284 + +0.4 780,284 + +0.9 780,284 + -0.6 780,292 - -0.4 780,390 + HP15_769 0.18 +0.4 780,398 - HP15_769 0.19 +0.8 780,398 - HP15_769 0.19 -0.8 780,398 - HP15_769 0.19 +0.2 780,413 - HP15_769 0.21 -0.6 780,423 - HP15_769 0.23 +1.1 780,438 + HP15_769 0.25 -0.7 780,438 + HP15_769 0.25 +0.1 780,446 - HP15_769 0.26 +0.6 780,446 - HP15_769 0.26 -0.3 780,482 - HP15_769 0.31 -0.8 780,487 + HP15_769 0.32 -0.5 780,617 + HP15_769 0.49 +0.3 780,622 + HP15_769 0.50 +1.7 780,630 - HP15_769 0.51 -0.3 780,635 - HP15_769 0.52 -0.3 780,682 + HP15_769 0.58 +0.4 780,692 + HP15_769 0.59 +0.3 780,762 - HP15_769 0.69 -0.1 780,819 + HP15_769 0.77 -0.4 780,819 - HP15_769 0.77 -0.1 780,896 + HP15_769 0.87 +0.4 780,915 - HP15_769 0.90 -0.3 780,998 - -0.2 781,007 + +0.1 781,519 - HP15_770 0.44 -1.5 781,572 + HP15_770 0.51 +0.4 781,622 + HP15_770 0.57 -0.2 781,673 + HP15_770 0.63 -0.6 781,709 + HP15_770 0.67 +0.1 781,709 + HP15_770 0.67 -0.9 781,717 - HP15_770 0.68 -0.3 781,724 - HP15_770 0.69 -0.1 781,878 + HP15_770 0.88 -1.0 781,878 + HP15_770 0.88 -0.4 781,985 + +1.2 781,987 + +0.3 781,987 + +0.0 781,990 - -0.4 781,990 - -0.7 782,132 + +0.3 782,431 + HP15_771 0.34 -1.4 782,567 - HP15_771 0.48 -0.8 782,651 + HP15_771 0.56 +0.4 782,868 - HP15_771 0.78 -3.5
Or see this region's nucleotide sequence