Strain Fitness in Marinobacter adhaerens HP15 around HP15_655

Experiment: monoculture; Experiment C, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_654 and HP15_655 are separated by 90 nucleotidesHP15_655 and HP15_656 are separated by 28 nucleotidesHP15_656 and HP15_657 are separated by 9 nucleotides HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908 _654 HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463 _655 HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773 _656 HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219 _657 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1at 676.061 kb on - strand, within HP15_654at 676.063 kb on + strand, within HP15_654at 676.069 kb on - strand, within HP15_654at 676.071 kb on - strand, within HP15_654at 676.130 kb on + strand, within HP15_654at 676.160 kb on + strand, within HP15_654at 676.173 kb on - strand, within HP15_654at 676.221 kb on + strand, within HP15_654at 676.221 kb on + strand, within HP15_654at 676.224 kb on - strand, within HP15_654at 676.308 kb on - strand, within HP15_654at 676.379 kb on + strand, within HP15_654at 676.452 kb on - strand, within HP15_654at 676.455 kb on + strand, within HP15_654at 676.520 kb on - strand, within HP15_654at 676.539 kb on - strand, within HP15_654at 676.539 kb on - strand, within HP15_654at 676.544 kb on - strand, within HP15_654at 676.564 kb on - strand, within HP15_654at 676.654 kb on + strand, within HP15_654at 676.662 kb on - strand, within HP15_654at 676.881 kb on + strandat 676.881 kb on + strandat 676.889 kb on - strandat 676.889 kb on - strandat 676.935 kb on - strandat 677.150 kb on - strand, within HP15_655at 677.249 kb on - strand, within HP15_655at 677.249 kb on - strand, within HP15_655at 677.326 kb on - strand, within HP15_655at 677.405 kb on - strand, within HP15_655at 677.434 kb on - strandat 677.439 kb on - strandat 677.498 kb on - strandat 677.545 kb on - strand, within HP15_656at 677.582 kb on - strand, within HP15_656at 677.582 kb on - strand, within HP15_656at 677.733 kb on + strand, within HP15_656at 677.736 kb on - strand, within HP15_656at 677.793 kb on + strandat 677.793 kb on + strandat 677.865 kb on - strandat 678.000 kb on + strand, within HP15_657at 678.040 kb on - strand, within HP15_657at 678.052 kb on - strand, within HP15_657at 678.092 kb on + strand, within HP15_657at 678.130 kb on - strand, within HP15_657at 678.130 kb on - strand, within HP15_657at 678.146 kb on - strand, within HP15_657at 678.201 kb on + strand, within HP15_657at 678.273 kb on - strand, within HP15_657at 678.319 kb on - strand, within HP15_657at 678.333 kb on - strand, within HP15_657at 678.409 kb on + strand, within HP15_657at 678.409 kb on - strand, within HP15_657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
remove
676,061 - HP15_654 0.44 -0.0
676,063 + HP15_654 0.44 +0.3
676,069 - HP15_654 0.45 -0.2
676,071 - HP15_654 0.45 +0.4
676,130 + HP15_654 0.49 +0.6
676,160 + HP15_654 0.51 -0.6
676,173 - HP15_654 0.52 -0.4
676,221 + HP15_654 0.55 +0.6
676,221 + HP15_654 0.55 +0.6
676,224 - HP15_654 0.55 +0.8
676,308 - HP15_654 0.60 -0.3
676,379 + HP15_654 0.65 +0.8
676,452 - HP15_654 0.70 -0.5
676,455 + HP15_654 0.70 -0.4
676,520 - HP15_654 0.74 -0.3
676,539 - HP15_654 0.76 -1.1
676,539 - HP15_654 0.76 -1.8
676,544 - HP15_654 0.76 -1.1
676,564 - HP15_654 0.77 +0.1
676,654 + HP15_654 0.83 -1.1
676,662 - HP15_654 0.84 +0.4
676,881 + -1.1
676,881 + -0.9
676,889 - +0.4
676,889 - -0.2
676,935 - -0.6
677,150 - HP15_655 0.32 -0.9
677,249 - HP15_655 0.54 -2.1
677,249 - HP15_655 0.54 -1.6
677,326 - HP15_655 0.70 -0.1
677,405 - HP15_655 0.87 -1.1
677,434 - +0.5
677,439 - +0.5
677,498 - -1.3
677,545 - HP15_656 0.19 -0.9
677,582 - HP15_656 0.32 -0.4
677,582 - HP15_656 0.32 -0.5
677,733 + HP15_656 0.85 +0.3
677,736 - HP15_656 0.87 -1.8
677,793 + -0.3
677,793 + -2.4
677,865 - -1.0
678,000 + HP15_657 0.15 +0.1
678,040 - HP15_657 0.18 +0.4
678,052 - HP15_657 0.19 -0.2
678,092 + HP15_657 0.22 -0.5
678,130 - HP15_657 0.24 -1.2
678,130 - HP15_657 0.24 +0.3
678,146 - HP15_657 0.25 +0.3
678,201 + HP15_657 0.29 +0.1
678,273 - HP15_657 0.34 -0.6
678,319 - HP15_657 0.37 -0.7
678,333 - HP15_657 0.38 -0.3
678,409 + HP15_657 0.44 -0.8
678,409 - HP15_657 0.44 -0.1

Or see this region's nucleotide sequence