Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_535 and HP15_536 overlap by 1 nucleotides HP15_536 and HP15_537 are separated by 115 nucleotides HP15_537 and HP15_rRNA4 are separated by 200 nucleotides
HP15_535: HP15_535 - sulfite oxidase subunit YedY, at 552,475 to 553,449
_535
HP15_536: HP15_536 - ferric reductase domain protein protein transmembrane component, N-terminal domain protein, at 553,449 to 554,072
_536
HP15_537: HP15_537 - hypothetical protein, at 554,188 to 554,298
_537
HP15_rRNA4: HP15_rRNA4 - 16S ribosomal RNA, at 554,499 to 556,030
_rRNA4
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1 at 552.520 kb on - strand at 552.538 kb on + strand at 552.774 kb on - strand, within HP15_535 at 552.846 kb on + strand, within HP15_535 at 552.900 kb on - strand, within HP15_535 at 553.026 kb on + strand, within HP15_535 at 553.165 kb on + strand, within HP15_535 at 553.184 kb on + strand, within HP15_535 at 553.241 kb on - strand, within HP15_535 at 553.274 kb on - strand, within HP15_535 at 553.306 kb on - strand, within HP15_535 at 553.341 kb on + strand, within HP15_535 at 553.348 kb on + strand, within HP15_535 at 553.353 kb on + strand at 553.358 kb on + strand at 553.376 kb on - strand at 553.416 kb on + strand at 553.424 kb on - strand at 553.424 kb on - strand at 553.949 kb on - strand, within HP15_536 at 553.966 kb on - strand, within HP15_536 at 554.186 kb on - strand at 554.188 kb on - strand at 554.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 552,520 - -0.0 552,538 + +1.4 552,774 - HP15_535 0.31 -0.8 552,846 + HP15_535 0.38 +0.7 552,900 - HP15_535 0.44 -0.5 553,026 + HP15_535 0.57 +0.1 553,165 + HP15_535 0.71 -0.7 553,184 + HP15_535 0.73 -1.1 553,241 - HP15_535 0.79 +0.6 553,274 - HP15_535 0.82 -0.2 553,306 - HP15_535 0.85 +1.0 553,341 + HP15_535 0.89 -0.1 553,348 + HP15_535 0.90 -0.5 553,353 + +0.9 553,358 + +1.1 553,376 - +1.0 553,416 + +0.8 553,424 - -2.3 553,424 - +0.6 553,949 - HP15_536 0.80 +1.6 553,966 - HP15_536 0.83 +0.1 554,186 - +0.3 554,188 - -0.0 554,188 - +0.9
Or see this region's nucleotide sequence