Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g34

Experiment: monoculture; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g31 and HP15_p42g32 are separated by 144 nucleotidesHP15_p42g32 and HP15_p42g33 overlap by 4 nucleotidesHP15_p42g33 and HP15_p42g34 are separated by 20 nucleotidesHP15_p42g34 and HP15_p42g35 are separated by 6 nucleotidesHP15_p42g35 and HP15_p42g36 are separated by 4 nucleotidesHP15_p42g36 and HP15_p42g37 are separated by 168 nucleotides HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819 _p42g31 HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095 _p42g32 HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727 _p42g33 HP15_p42g34: HP15_p42g34 - DNA-binding protein, at 27,748 to 28,131 _p42g34 HP15_p42g35: HP15_p42g35 - membrane protein, at 28,138 to 28,644 _p42g35 HP15_p42g36: HP15_p42g36 - hypothetical protein, at 28,649 to 28,759 _p42g36 HP15_p42g37: HP15_p42g37 - conserved hypothetical protein, at 28,928 to 29,197 _p42g37 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.767 kb on - strand, within HP15_p42g31at 26.783 kb on + strand, within HP15_p42g31at 26.791 kb on + strandat 26.791 kb on - strandat 26.994 kb on + strand, within HP15_p42g32at 27.014 kb on + strand, within HP15_p42g32at 27.027 kb on - strand, within HP15_p42g32at 27.133 kb on + strandat 27.179 kb on - strand, within HP15_p42g33at 27.179 kb on - strand, within HP15_p42g33at 27.181 kb on - strand, within HP15_p42g33at 27.192 kb on - strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.320 kb on - strand, within HP15_p42g33at 27.330 kb on + strand, within HP15_p42g33at 27.343 kb on - strand, within HP15_p42g33at 27.415 kb on + strand, within HP15_p42g33at 27.457 kb on + strand, within HP15_p42g33at 27.513 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.554 kb on - strand, within HP15_p42g33at 27.651 kb on + strand, within HP15_p42g33at 27.659 kb on - strand, within HP15_p42g33at 27.745 kb on + strandat 27.879 kb on - strand, within HP15_p42g34at 27.880 kb on + strand, within HP15_p42g34at 27.887 kb on + strand, within HP15_p42g34at 27.887 kb on + strand, within HP15_p42g34at 27.905 kb on - strand, within HP15_p42g34at 27.927 kb on + strand, within HP15_p42g34at 27.962 kb on + strand, within HP15_p42g34at 27.962 kb on + strand, within HP15_p42g34at 27.967 kb on + strand, within HP15_p42g34at 27.970 kb on - strand, within HP15_p42g34at 27.970 kb on - strand, within HP15_p42g34at 28.005 kb on - strand, within HP15_p42g34at 28.012 kb on + strand, within HP15_p42g34at 28.012 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.019 kb on + strand, within HP15_p42g34at 28.025 kb on + strand, within HP15_p42g34at 28.027 kb on - strand, within HP15_p42g34at 28.027 kb on - strand, within HP15_p42g34at 28.062 kb on - strand, within HP15_p42g34at 28.138 kb on - strandat 28.179 kb on + strandat 28.250 kb on - strand, within HP15_p42g35at 28.281 kb on + strand, within HP15_p42g35at 28.289 kb on - strand, within HP15_p42g35at 28.359 kb on - strand, within HP15_p42g35at 28.361 kb on + strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.414 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.431 kb on - strand, within HP15_p42g35at 28.433 kb on + strand, within HP15_p42g35at 28.436 kb on - strand, within HP15_p42g35at 28.442 kb on - strand, within HP15_p42g35at 28.443 kb on - strand, within HP15_p42g35at 28.626 kb on + strandat 28.653 kb on - strandat 28.699 kb on - strand, within HP15_p42g36at 28.791 kb on - strandat 28.791 kb on - strandat 28.798 kb on + strandat 28.798 kb on + strandat 28.798 kb on - strandat 28.806 kb on - strandat 28.882 kb on + strandat 28.898 kb on + strandat 28.966 kb on - strand, within HP15_p42g37at 28.972 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.069 kb on - strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.079 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1
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26,767 - HP15_p42g31 0.85 -1.8
26,783 + HP15_p42g31 0.90 +0.2
26,791 + +0.2
26,791 - +0.8
26,994 + HP15_p42g32 0.23 -0.5
27,014 + HP15_p42g32 0.38 +0.4
27,027 - HP15_p42g32 0.48 +0.8
27,133 + -1.1
27,179 - HP15_p42g33 0.14 -0.6
27,179 - HP15_p42g33 0.14 -0.1
27,181 - HP15_p42g33 0.14 +0.2
27,192 - HP15_p42g33 0.16 -2.5
27,252 + HP15_p42g33 0.25 +0.4
27,252 + HP15_p42g33 0.25 +0.4
27,260 - HP15_p42g33 0.26 +0.5
27,260 - HP15_p42g33 0.26 -1.6
27,320 - HP15_p42g33 0.36 -1.3
27,330 + HP15_p42g33 0.37 +0.6
27,343 - HP15_p42g33 0.39 -2.3
27,415 + HP15_p42g33 0.51 -0.3
27,457 + HP15_p42g33 0.57 +0.4
27,513 + HP15_p42g33 0.66 -0.5
27,546 + HP15_p42g33 0.71 -0.2
27,546 + HP15_p42g33 0.71 -0.0
27,546 + HP15_p42g33 0.71 +0.4
27,546 + HP15_p42g33 0.71 +1.0
27,554 - HP15_p42g33 0.73 -0.0
27,651 + HP15_p42g33 0.88 +0.2
27,659 - HP15_p42g33 0.89 -1.7
27,745 + -1.1
27,879 - HP15_p42g34 0.34 -0.4
27,880 + HP15_p42g34 0.34 +0.1
27,887 + HP15_p42g34 0.36 -2.3
27,887 + HP15_p42g34 0.36 +0.1
27,905 - HP15_p42g34 0.41 -0.5
27,927 + HP15_p42g34 0.47 +0.6
27,962 + HP15_p42g34 0.56 -0.0
27,962 + HP15_p42g34 0.56 +0.1
27,967 + HP15_p42g34 0.57 +0.5
27,970 - HP15_p42g34 0.58 +0.9
27,970 - HP15_p42g34 0.58 -0.7
28,005 - HP15_p42g34 0.67 +0.4
28,012 + HP15_p42g34 0.69 +0.4
28,012 + HP15_p42g34 0.69 +1.2
28,019 + HP15_p42g34 0.71 -0.4
28,019 + HP15_p42g34 0.71 +0.3
28,019 + HP15_p42g34 0.71 +0.9
28,025 + HP15_p42g34 0.72 -0.2
28,027 - HP15_p42g34 0.73 +0.6
28,027 - HP15_p42g34 0.73 -0.7
28,062 - HP15_p42g34 0.82 -0.3
28,138 - -0.6
28,179 + +0.0
28,250 - HP15_p42g35 0.22 -0.3
28,281 + HP15_p42g35 0.28 +0.2
28,289 - HP15_p42g35 0.30 -0.8
28,359 - HP15_p42g35 0.44 -0.4
28,361 + HP15_p42g35 0.44 +1.4
28,369 - HP15_p42g35 0.46 -0.2
28,369 - HP15_p42g35 0.46 +0.1
28,369 - HP15_p42g35 0.46 -1.0
28,414 + HP15_p42g35 0.54 +0.4
28,415 + HP15_p42g35 0.55 -0.3
28,415 + HP15_p42g35 0.55 +0.0
28,423 - HP15_p42g35 0.56 -0.2
28,423 - HP15_p42g35 0.56 -0.4
28,423 - HP15_p42g35 0.56 -0.1
28,428 + HP15_p42g35 0.57 -1.3
28,428 + HP15_p42g35 0.57 -0.8
28,431 - HP15_p42g35 0.58 +0.4
28,433 + HP15_p42g35 0.58 -0.5
28,436 - HP15_p42g35 0.59 +0.2
28,442 - HP15_p42g35 0.60 +0.5
28,443 - HP15_p42g35 0.60 +0.2
28,626 + +1.1
28,653 - -1.2
28,699 - HP15_p42g36 0.45 -0.4
28,791 - +0.4
28,791 - +0.6
28,798 + -0.6
28,798 + -0.9
28,798 - -0.8
28,806 - +0.7
28,882 + -0.7
28,898 + -0.5
28,966 - HP15_p42g37 0.14 +0.3
28,972 + HP15_p42g37 0.16 +0.2
29,061 + HP15_p42g37 0.49 +0.4
29,061 + HP15_p42g37 0.49 +0.2
29,069 - HP15_p42g37 0.52 +0.5
29,071 + HP15_p42g37 0.53 +0.8
29,071 + HP15_p42g37 0.53 +0.1
29,076 + HP15_p42g37 0.55 -0.2
29,076 + HP15_p42g37 0.55 +0.3
29,076 + HP15_p42g37 0.55 -1.5
29,076 + HP15_p42g37 0.55 -0.9
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 -0.7
29,076 + HP15_p42g37 0.55 -0.2
29,076 + HP15_p42g37 0.55 +0.8
29,076 + HP15_p42g37 0.55 +0.6
29,076 + HP15_p42g37 0.55 +1.0
29,076 + HP15_p42g37 0.55 -0.2
29,076 + HP15_p42g37 0.55 +0.1
29,076 + HP15_p42g37 0.55 +0.8
29,076 + HP15_p42g37 0.55 +0.5
29,076 + HP15_p42g37 0.55 -0.7
29,076 + HP15_p42g37 0.55 -0.4
29,076 + HP15_p42g37 0.55 -0.0
29,079 - HP15_p42g37 0.56 -0.4
29,084 - HP15_p42g37 0.58 -0.8
29,084 - HP15_p42g37 0.58 -0.3
29,084 - HP15_p42g37 0.58 +0.1
29,084 - HP15_p42g37 0.58 -0.2
29,084 - HP15_p42g37 0.58 +0.8
29,084 - HP15_p42g37 0.58 +0.4
29,084 - HP15_p42g37 0.58 -0.1
29,084 - HP15_p42g37 0.58 -0.2
29,084 - HP15_p42g37 0.58 -1.2
29,084 - HP15_p42g37 0.58 -0.3
29,084 - HP15_p42g37 0.58 +0.6
29,084 - HP15_p42g37 0.58 +0.1
29,084 - HP15_p42g37 0.58 -0.2

Or see this region's nucleotide sequence