Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3885 and HP15_3886 are separated by 336 nucleotides HP15_3886 and HP15_3887 overlap by 1 nucleotides HP15_3887 and HP15_3888 overlap by 4 nucleotides HP15_3888 and HP15_3889 are separated by 67 nucleotides
HP15_3885: HP15_3885 - formate and nitrite transporter, at 4,115,422 to 4,116,270
_3885
HP15_3886: HP15_3886 - energy transducer TonB, C-terminal region, at 4,116,607 to 4,117,347
_3886
HP15_3887: HP15_3887 - biopolymer transport protein ExbD/TolR, at 4,117,347 to 4,117,754
_3887
HP15_3888: HP15_3888 - ferric siderophore transport system inner membrane protein E, at 4,117,751 to 4,118,065
_3888
HP15_3889: HP15_3889 - MotA/TolQ/ExbB proton channel, at 4,118,133 to 4,118,921
_3889
Position (kb) 4116
4117
4118 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4115.646 kb on + strand, within HP15_3885 at 4116.002 kb on + strand, within HP15_3885 at 4116.087 kb on + strand, within HP15_3885 at 4116.087 kb on + strand at 4116.112 kb on + strand, within HP15_3885 at 4116.112 kb on + strand, within HP15_3885 at 4116.160 kb on + strand, within HP15_3885 at 4116.164 kb on - strand, within HP15_3885 at 4116.176 kb on + strand, within HP15_3885 at 4116.181 kb on + strand, within HP15_3885 at 4116.268 kb on - strand at 4116.268 kb on - strand at 4116.427 kb on - strand at 4116.682 kb on - strand, within HP15_3886 at 4116.701 kb on - strand, within HP15_3886 at 4116.711 kb on - strand, within HP15_3886 at 4116.716 kb on - strand, within HP15_3886 at 4116.716 kb on - strand, within HP15_3886 at 4116.822 kb on + strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.947 kb on - strand, within HP15_3886 at 4116.994 kb on - strand, within HP15_3886 at 4117.046 kb on + strand, within HP15_3886 at 4117.054 kb on - strand, within HP15_3886 at 4117.060 kb on + strand, within HP15_3886 at 4117.076 kb on + strand, within HP15_3886 at 4117.190 kb on + strand, within HP15_3886 at 4117.217 kb on - strand, within HP15_3886 at 4117.221 kb on + strand, within HP15_3886 at 4117.238 kb on + strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.257 kb on + strand, within HP15_3886 at 4117.344 kb on + strand at 4117.401 kb on + strand, within HP15_3887 at 4117.560 kb on - strand, within HP15_3887 at 4117.707 kb on + strand, within HP15_3887 at 4117.725 kb on + strand at 4117.733 kb on - strand at 4117.772 kb on - strand at 4117.893 kb on - strand, within HP15_3888 at 4118.053 kb on + strand at 4118.063 kb on + strand at 4118.072 kb on + strand at 4118.102 kb on - strand at 4118.125 kb on + strand at 4118.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 4,115,646 + HP15_3885 0.26 +1.0 4,116,002 + HP15_3885 0.68 +1.1 4,116,087 + HP15_3885 0.78 +0.5 4,116,087 + -1.4 4,116,112 + HP15_3885 0.81 +0.1 4,116,112 + HP15_3885 0.81 -0.2 4,116,160 + HP15_3885 0.87 +1.1 4,116,164 - HP15_3885 0.87 +1.4 4,116,176 + HP15_3885 0.89 +0.4 4,116,181 + HP15_3885 0.89 +1.4 4,116,268 - +0.4 4,116,268 - +0.5 4,116,427 - -1.4 4,116,682 - HP15_3886 0.10 -0.2 4,116,701 - HP15_3886 0.13 +1.1 4,116,711 - HP15_3886 0.14 -0.6 4,116,716 - HP15_3886 0.15 -0.6 4,116,716 - HP15_3886 0.15 -0.9 4,116,822 + HP15_3886 0.29 +0.0 4,116,899 - HP15_3886 0.39 -0.5 4,116,899 - HP15_3886 0.39 -0.4 4,116,947 - HP15_3886 0.46 -0.6 4,116,994 - HP15_3886 0.52 +0.3 4,117,046 + HP15_3886 0.59 -0.7 4,117,054 - HP15_3886 0.60 +0.3 4,117,060 + HP15_3886 0.61 +0.3 4,117,076 + HP15_3886 0.63 -2.1 4,117,190 + HP15_3886 0.79 -1.1 4,117,217 - HP15_3886 0.82 -0.6 4,117,221 + HP15_3886 0.83 -0.3 4,117,238 + HP15_3886 0.85 +1.1 4,117,246 - HP15_3886 0.86 -0.7 4,117,246 - HP15_3886 0.86 -1.9 4,117,257 + HP15_3886 0.88 -0.7 4,117,344 + +0.4 4,117,401 + HP15_3887 0.13 -0.4 4,117,560 - HP15_3887 0.52 -0.5 4,117,707 + HP15_3887 0.88 -3.1 4,117,725 + +0.1 4,117,733 - +0.0 4,117,772 - +0.4 4,117,893 - HP15_3888 0.45 -0.4 4,118,053 + -0.5 4,118,063 + -2.2 4,118,072 + +0.0 4,118,102 - -0.7 4,118,125 + -1.4 4,118,168 - -2.4
Or see this region's nucleotide sequence