Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_351 and HP15_352 are separated by 25 nucleotides HP15_352 and HP15_353 are separated by 16 nucleotides HP15_353 and HP15_354 are separated by 1 nucleotides
HP15_351: HP15_351 - Cl-channel, voltage-gated family protein, at 345,224 to 346,999
_351
HP15_352: HP15_352 - N-acetyl-gamma-glutamyl-phosphate reductase, at 347,025 to 348,191
_352
HP15_353: HP15_353 - conserved hypothetical protein, at 348,208 to 348,948
_353
HP15_354: HP15_354 - protein containing DUF583, at 348,950 to 349,435
_354
Position (kb) 347
348
349 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 346.030 kb on + strand, within HP15_351 at 346.105 kb on - strand, within HP15_351 at 346.214 kb on - strand, within HP15_351 at 346.219 kb on + strand, within HP15_351 at 346.375 kb on - strand, within HP15_351 at 346.531 kb on + strand, within HP15_351 at 346.738 kb on + strand, within HP15_351 at 347.110 kb on + strand at 347.204 kb on + strand, within HP15_352 at 347.391 kb on + strand, within HP15_352 at 347.507 kb on - strand, within HP15_352 at 347.924 kb on + strand, within HP15_352 at 347.992 kb on + strand, within HP15_352 at 348.046 kb on + strand, within HP15_352 at 348.423 kb on + strand, within HP15_353 at 348.838 kb on - strand, within HP15_353 at 348.917 kb on + strand at 348.925 kb on - strand at 349.112 kb on + strand, within HP15_354
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 346,030 + HP15_351 0.45 -0.7 346,105 - HP15_351 0.50 +0.6 346,214 - HP15_351 0.56 +0.2 346,219 + HP15_351 0.56 -0.5 346,375 - HP15_351 0.65 -0.7 346,531 + HP15_351 0.74 -1.0 346,738 + HP15_351 0.85 -1.2 347,110 + +0.2 347,204 + HP15_352 0.15 -3.2 347,391 + HP15_352 0.31 -1.3 347,507 - HP15_352 0.41 -3.2 347,924 + HP15_352 0.77 -4.3 347,992 + HP15_352 0.83 -3.5 348,046 + HP15_352 0.87 -5.1 348,423 + HP15_353 0.29 -1.3 348,838 - HP15_353 0.85 +1.5 348,917 + -0.8 348,925 - -1.7 349,112 + HP15_354 0.33 -0.0
Or see this region's nucleotide sequence