Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_336 and HP15_337 are separated by 108 nucleotides HP15_337 and HP15_338 overlap by 20 nucleotides
HP15_336: HP15_336 - conserved hypothetical protein, at 331,871 to 333,457
_336
HP15_337: HP15_337 - hypothetical protein, at 333,566 to 333,688
_337
HP15_338: HP15_338 - penicillin-binding protein 1B, at 333,669 to 335,909
_338
Position (kb) 333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 332.675 kb on + strand, within HP15_336 at 332.675 kb on + strand, within HP15_336 at 332.713 kb on + strand, within HP15_336 at 332.793 kb on + strand, within HP15_336 at 332.934 kb on + strand, within HP15_336 at 333.012 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.245 kb on + strand, within HP15_336 at 333.406 kb on + strand at 333.406 kb on + strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.455 kb on - strand at 333.475 kb on + strand at 333.618 kb on - strand, within HP15_337 at 333.691 kb on + strand at 333.709 kb on + strand at 333.801 kb on - strand at 333.980 kb on + strand, within HP15_338 at 334.061 kb on + strand, within HP15_338 at 334.208 kb on + strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.462 kb on - strand, within HP15_338
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 332,675 + HP15_336 0.51 -2.7 332,675 + HP15_336 0.51 -1.9 332,713 + HP15_336 0.53 +0.0 332,793 + HP15_336 0.58 -2.4 332,934 + HP15_336 0.67 -2.0 333,012 + HP15_336 0.72 -2.2 333,240 + HP15_336 0.86 +0.0 333,240 + HP15_336 0.86 -3.7 333,245 + HP15_336 0.87 -3.6 333,406 + -2.5 333,406 + -4.4 333,414 - -2.9 333,414 - -1.4 333,414 - -2.9 333,414 - -2.7 333,455 - -2.2 333,475 + -2.5 333,618 - HP15_337 0.42 -1.9 333,691 + -0.6 333,709 + -0.4 333,801 - -0.5 333,980 + HP15_338 0.14 -0.4 334,061 + HP15_338 0.17 +0.4 334,208 + HP15_338 0.24 -0.6 334,231 - HP15_338 0.25 +0.4 334,231 - HP15_338 0.25 +0.2 334,242 + HP15_338 0.26 +1.2 334,242 + HP15_338 0.26 -0.8 334,410 - HP15_338 0.33 -0.3 334,410 - HP15_338 0.33 +2.0 334,462 - HP15_338 0.35 +0.7
Or see this region's nucleotide sequence