Experiment: monoculture; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1659 and HP15_1660 are separated by 16 nucleotides HP15_1660 and HP15_1661 are separated by 195 nucleotides HP15_1661 and HP15_1662 are separated by 58 nucleotides HP15_1662 and HP15_1663 are separated by 321 nucleotides
HP15_1659: HP15_1659 - hypothetical protein, at 1,753,751 to 1,753,873
_1659
HP15_1660: HP15_1660 - hypothetical protein, at 1,753,890 to 1,754,024
_1660
HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540
_1661
HP15_1662: HP15_1662 - conserved hypothetical protein, secreted, at 1,754,599 to 1,754,850
_1662
HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167
_1663
Position (kb)
1754
1755 Strain fitness (log2 ratio)
-2
-1
0
1 at 1753.749 kb on + strand at 1753.858 kb on + strand, within HP15_1659 at 1753.858 kb on + strand, within HP15_1659 at 1753.984 kb on - strand, within HP15_1660 at 1753.994 kb on - strand, within HP15_1660 at 1754.289 kb on + strand, within HP15_1661 at 1754.412 kb on + strand, within HP15_1661 at 1754.417 kb on + strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.548 kb on - strand at 1754.585 kb on - strand at 1754.653 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.730 kb on - strand, within HP15_1662 at 1754.743 kb on - strand, within HP15_1662 at 1754.929 kb on + strand at 1754.929 kb on + strand at 1754.934 kb on + strand at 1755.004 kb on - strand at 1755.249 kb on + strand at 1755.347 kb on - strand, within HP15_1663 at 1755.350 kb on + strand, within HP15_1663 at 1755.363 kb on - strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.481 kb on + strand, within HP15_1663 at 1755.512 kb on + strand, within HP15_1663 at 1755.520 kb on - strand, within HP15_1663 at 1755.585 kb on - strand, within HP15_1663 at 1755.599 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.642 kb on + strand, within HP15_1663 at 1755.650 kb on + strand, within HP15_1663
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 1 remove 1,753,749 + +0.2 1,753,858 + HP15_1659 0.87 +0.7 1,753,858 + HP15_1659 0.87 +0.8 1,753,984 - HP15_1660 0.70 +0.2 1,753,994 - HP15_1660 0.77 +0.0 1,754,289 + HP15_1661 0.21 -2.1 1,754,412 + HP15_1661 0.60 +0.6 1,754,417 + HP15_1661 0.61 -1.8 1,754,465 - HP15_1661 0.76 -0.3 1,754,465 - HP15_1661 0.76 +0.1 1,754,548 - +0.8 1,754,585 - +0.2 1,754,653 - HP15_1662 0.21 -1.0 1,754,668 - HP15_1662 0.27 +0.2 1,754,668 - HP15_1662 0.27 -0.2 1,754,730 - HP15_1662 0.52 -0.5 1,754,743 - HP15_1662 0.57 -0.8 1,754,929 + +0.0 1,754,929 + -2.7 1,754,934 + +0.5 1,755,004 - +0.2 1,755,249 + +0.6 1,755,347 - HP15_1663 0.18 -0.3 1,755,350 + HP15_1663 0.18 +0.0 1,755,363 - HP15_1663 0.19 +0.5 1,755,365 + HP15_1663 0.19 +0.3 1,755,365 + HP15_1663 0.19 -0.1 1,755,481 + HP15_1663 0.31 +0.4 1,755,512 + HP15_1663 0.34 +0.2 1,755,520 - HP15_1663 0.35 -2.0 1,755,585 - HP15_1663 0.41 -0.4 1,755,599 + HP15_1663 0.43 -0.7 1,755,631 + HP15_1663 0.46 -0.5 1,755,631 + HP15_1663 0.46 -1.5 1,755,633 - HP15_1663 0.46 -0.3 1,755,633 - HP15_1663 0.46 +1.0 1,755,642 + HP15_1663 0.47 +0.9 1,755,650 + HP15_1663 0.48 -0.0
Or see this region's nucleotide sequence